Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60700 1134 / 0 glycosyltransferase family protein 2 (.1) AT5G12260 100 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037396 [exp] 1717 / 0 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1) Lus10021578 [exp] 100 / 1e-24 ND / Lus10036072 [exp] 105 / 5e-23 AT5G12260 620 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010900 [exp] 1540 / 0 AT5G60700 1170 / 0.0 glycosyltransferase family protein 2 (.1) Potri.004G212000 [exp] 1521 / 0 AT5G60700 1167 / 0.0 glycosyltransferase family protein 2 (.1) Potri.001G272400 [exp] 105 / 2e-23 AT5G12260 665 / 0.0 unknown protein Potri.009G066900 [exp] 103 / 2e-22 AT5G12260 669 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041317 pacid=23179806 polypeptide=Lus10041317 locus=Lus10041317.g ID=Lus10041317.BGIv1.0 annot-version=v1.0 ATGGGGATGAGCAGGAGCTTCAAGAGTGGGGATTACTTGGAAGGAATGCTCAGTGATTACGTCGGTGGAGGGAAAGGCAGTAACCCCACCATAGCCCTCA GGACCAAACCCGACTTTACTTGGGCCACAAGGTTCGCTCAGAACTGGAAGCGCCACTTCGTAATCCCTCCCCATGTCGTCGGCAGGTACCAGGAGTCTGC TGCATCCTCCTTGGTAAAGGAAGATCAAGAGGTGATGATGGTTCAGCATCAGAACCCTTCCCAGGTCTGTGAGCACGAGAAGATCGATTTCTTGCAGAAG AAGTCAACCGACGCGCAGATGATCAAGCTGAAGAGGGAGCTCTACGACGAGGTGTTGAGTTTCCAGAGCAAATCAGTAGGGACCGAGACCCTTGTCCAGC TCATGACGATGAATTCCAGATGGGACATTCGGAACCCGATCAGGCCGAAAGTGACTGTGATCCTCAACCATTTCAAAAGGAAGACGCTTTGTGCTCAGCT GGAGTCCTTGCTCCACCAAACGCTGCCGTTCCACCACGTTTGGGTGCTTGCATTTGGGTCCCCTAACGAGCTCTCTCTCAAGAGGATCGTCGATAGCTAC AACGATTCACGAATCAGCTTCGTGAGCTCCACCTACGATTTCAAGTACTACGGGAGGTTCCAGATGGCTCTGCAGACTGAGTCTGATCTAGTCTATGTTG TGGATGATGACATGATCCCGGGGACCAGAATGCTGCAGATCTTGTCTCATGTTGCTGGAACTGAGAAGTATAAGAACTCTGTTTTGGGAAGCATTGGAAG GATCTTGCCATTCAGGCAGAAGGATTTTACTTTCCCAAGCTACAGAAAGTTCAGGTCAAAGGAAGCTGGACTTTACCTCCCTGATCCTGCTTATGACATT ACAGTTGACAAAATTGTGCAGGTTGACTTCCTTTCAAGCTCTTGGTTTCTGTCTGCTGAGCTTGTCAGGACTCTTTTCATTGAGACCCCTCTCACTTTCA TGACTGGGGAAGATCTCCATCTCAGCTACCAGCTTCAAAAGTACAGAAATGCAGGATCATACGTGCTTCCAGTTGATCCAAACGACAAGGAAACATGGGG AGACAGCGAGCACAGACTTGCCTACGTGTCCGAGACGACAGTGATATTCAAGGACGTGGTCCAAGTCCGGGATGATCAATGGTGGAAAGCCATGTCTGCT GGATACGTGACACAGTGGGCTATGATGTACCCGCAGAACATCGATGCGCTCTTCTACGCGCATTCAGTCGACGAGGTGAAGGCCCTGATGCCACTCCTCG AGAAGTTCCGGTCCACTGTGGGGAAGAAGGCCTACATTGCTGTCCCCGGAGGAAGGTTCTGCCTTTGCGAGGATGCTGCAACTGCACTTCGTTGGCCTAA GCTGGTTTGCAAGGAGAGGAGGTTCAAGATATTCGATCTCGGAGTTGGTGCATTATCCGGAGCTTCGAAATCGGAGGTTCCAGTGGTTCAATCGGTATAC TCCAGCATGAAAGGGCTGATCAGAATGCACAATCCAAGTGTTGTCATCACAGTTTCTGACATTGATGCTGATGTGAAGAAAGCTCTCAGAATGGCTGTTG AGAGTAATAATGGTACAACAACATTTATTCTTCTGCCTAGGCCTTCAATTCCCAAAGTCCTCTGGATGGCTGATCTTAGATCCTCTGCCTTGCCAAATTG GAACAAGATGAGGATCTCAATCAACATAATCACACAAAACAGGGCATCATCCTTAGCAAGACTCCTAAACTCCCTCAGCAACGCATACTACCTAGGAGAC GAAGTCCCAATCTCATTCAACATGGACAGCAAAGTCGACGAAGCAACAATCAAGCTAGTGACAACATTCAACTGGCCACACGGTCCCAAGACGCTGAGAA GAAGGATCATCCAAGGAGGCCTAATTCGAGCCGTGAGCGAAAGCTGGTACCCTTCCTCCGACGACGATTTCGGCCTCTTACTTGAAGACGACATCGAAGT CTCCCCTTACTACTACCTCTGGATCAAATACGCACTCTTGGCATACCACTACGACCCTCAGGTGTCCCTCCCCGAACTCTCCTCCATCTCCCTCTACACT CCAAAACTCGTCGAAGTTGTGAAAGAAAGGCCGAAATGGAATGCGACGGAGTTTTTCAAAAGAATTCATCCGAACACGCCGTATCTCCACCAGCTGCCTT GCAGCTGGGGAGCTGTCTTCTTCCCCAAGCAATGGAGGGAGTTTTACGTGTACATGAACATGAGGTTCACAGAGGATGCCAAGTTGAACCCGGTCCAGAT CCCGAAATCGAGAACCAACGGCTGGCAGGCTTCGTGGAAGAAGTTTCTGATCGACATGATGTATTTGAGAGGGTATGTGAGTTTGTACCCGAATTTCCCC AACCAGGCGAGCTTCTCGACGAATCATATGGAGCCCGGTGCACACGTTTCGGCCAAGGACAATGTTGTGAAGCATAACAAGGCCGATTTCGAGGTGCCAT TGATTAAGGATGATTTCAAGGCGTTGCTTCCCAACGGGAAGTTCCCTCAGGCTTCTAAGTTGCCCTCGCTGAACTTGTTTAACCAGCCTGTTTCGCTGAA GGGTCTCAAGGCTGCTGGTGCTAAGCTTGGGCAGGATGTTTTGAAGTGTGATAACGCTACTGAGGTTGTTGCTGTTGATCACCAGACTGGTTTGCCCCAT CGATGTGCCAAATTCTGA
AA sequence Show only first row Show all	>Lus10041317 pacid=23179806 polypeptide=Lus10041317 locus=Lus10041317.g ID=Lus10041317.BGIv1.0 annot-version=v1.0 MGMSRSFKSGDYLEGMLSDYVGGGKGSNPTIALRTKPDFTWATRFAQNWKRHFVIPPHVVGRYQESAASSLVKEDQEVMMVQHQNPSQVCEHEKIDFLQK KSTDAQMIKLKRELYDEVLSFQSKSVGTETLVQLMTMNSRWDIRNPIRPKVTVILNHFKRKTLCAQLESLLHQTLPFHHVWVLAFGSPNELSLKRIVDSY NDSRISFVSSTYDFKYYGRFQMALQTESDLVYVVDDDMIPGTRMLQILSHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDI TVDKIVQVDFLSSSWFLSAELVRTLFIETPLTFMTGEDLHLSYQLQKYRNAGSYVLPVDPNDKETWGDSEHRLAYVSETTVIFKDVVQVRDDQWWKAMSA GYVTQWAMMYPQNIDALFYAHSVDEVKALMPLLEKFRSTVGKKAYIAVPGGRFCLCEDAATALRWPKLVCKERRFKIFDLGVGALSGASKSEVPVVQSVY SSMKGLIRMHNPSVVITVSDIDADVKKALRMAVESNNGTTTFILLPRPSIPKVLWMADLRSSALPNWNKMRISINIITQNRASSLARLLNSLSNAYYLGD EVPISFNMDSKVDEATIKLVTTFNWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDFGLLLEDDIEVSPYYYLWIKYALLAYHYDPQVSLPELSSISLYT PKLVEVVKERPKWNATEFFKRIHPNTPYLHQLPCSWGAVFFPKQWREFYVYMNMRFTEDAKLNPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFP NQASFSTNHMEPGAHVSAKDNVVKHNKADFEVPLIKDDFKALLPNGKFPQASKLPSLNLFNQPVSLKGLKAAGAKLGQDVLKCDNATEVVAVDHQTGLPH RCAKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	0	1
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	1.4	0.9614
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	4.2	0.9448
AT4G12010			Disease resistance protein (TI...		Lus10028058 [exp]	4.7	0.9350
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	6.8	0.9232
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	6.9	0.9343
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	7.1	0.9487
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	7.7	0.9436
					Lus10041915 [exp]	8.8	0.9335
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	11.0	0.9316
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	11.4	0.9432

Compare expression of checked genes

Lus10041317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.