Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27490 377 / 1e-133 3'-5'-exoribonuclease family protein (.1) AT3G61620 99 / 5e-25 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT3G46210 62 / 2e-11 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037395 [exp] 436 / 5e-157 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10005148 [exp] 86 / 2e-19 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 83 / 2e-18 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10000255 [exp] 67 / 3e-13 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10009221 [exp] 59 / 5e-10 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10037991 [exp] 52 / 7e-08 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212500 [exp] 391 / 5e-139 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 385 / 7e-137 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.014G094300 [exp] 100 / 2e-25 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G043600 [exp] 54 / 2e-08 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10041318 pacid=23179980 polypeptide=Lus10041318 locus=Lus10041318.g ID=Lus10041318.BGIv1.0 annot-version=v1.0 ATGGCATCAAAAGCCACTCCAACAGCTCCTCCCACTACATACTCCCCGACTCCGACATTGAAAAAATCCCGGCCTCCCATCTTCAAAGACTCCGACGTCG ATTGGGTCCGACCCGACGGCCGAGGGTTTCATCAGTGCCGCCCCGCATTTTTCAGGACAGCTGCTGTAAATGCTGCTGCTGGATCTGCCTATGCCGAGTT TGGAAACACAAAGGTCATTGTGTCTGTATTTGGACCGAGAGAAAGCAAGAAAGCAATGATGTACAGTGATGTGGGTCGGTTAAACTGCAATGTTAGCTAC ACAAATTTTGCCACCCCAGTGCGTGGTCAGGAAACAGACGATAAAGAATTATCATCTATGCTTCACAAAGCTCTCGAGGGTGCGATATTGCTGGAGACTT TTCCCAAGACAACAGTAGATGTTTTCGCCTTGGTGTTGGAGTCTGGTGGCAGTGATCTTCCTGTTGTGGTGTCTTGTGCAAGCCTTGCTCTGGCTGATGC GGGGATTATGATGTATGACCTTGTTGCTGGAGTTTCTGTGGCCTGTCTGGGGAAGAACCTGATGATCGATCCAGTGCAGGAAGAGGAAAGCTGTCAAGAT GGAAGTTTGATGCTGACTTGTATGCCTTCCCGGTACGAGGTTACCCAGCTAACCATTACAGGGGAATGGTCATCATCAAATCTGAATGAGGCAATGCAGC TGTGTCTGGATGCATGCTCGAAACTTGCCAAGATCATGAGGTCTTGTCTGAAAGATGCAGCTGGCCAAGATTAG
AA sequence Show only first row Show all	>Lus10041318 pacid=23179980 polypeptide=Lus10041318 locus=Lus10041318.g ID=Lus10041318.BGIv1.0 annot-version=v1.0 MASKATPTAPPTTYSPTPTLKKSRPPIFKDSDVDWVRPDGRGFHQCRPAFFRTAAVNAAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSY TNFATPVRGQETDDKELSSMLHKALEGAILLETFPKTTVDVFALVLESGGSDLPVVVSCASLALADAGIMMYDLVAGVSVACLGKNLMIDPVQEEESCQD GSLMLTCMPSRYEVTQLTITGEWSSSNLNEAMQLCLDACSKLAKIMRSCLKDAAGQD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27490			3'-5'-exoribonuclease family p...		Lus10041318 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10023871 [exp]	2.8	0.9311
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	3.3	0.9443
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	9.2	0.9437
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	16.0	0.9327
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	21.7	0.9299
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	23.9	0.9241
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	24.2	0.9281
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	25.6	0.9289
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	27.0	0.9271
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	28.7	0.9226

Compare expression of checked genes

Lus10041318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.