Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28260 800 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G24610 643 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 639 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT4G30560 598 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G14870 595 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT5G53130 592 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT5G57940 590 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 587 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT3G48010 580 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT1G15990 576 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037394 [exp] 1027 / 0 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10021461 [exp] 895 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 635 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 631 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 629 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 601 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10002363 [exp] 595 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039486 [exp] 595 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10026233 [exp] 594 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010700 [exp] 811 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G009200 [exp] 648 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.018G097600 [exp] 635 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 604 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G106100 [exp] 600 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 592 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.013G108200 [exp] 590 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.012G002200 [exp] 586 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 563 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 562 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041319 pacid=23179650 polypeptide=Lus10041319 locus=Lus10041319.g ID=Lus10041319.BGIv1.0 annot-version=v1.0 ATGGCTTGTTCCAATTCAAGATCTGTAAGGTTTAGAGATGACCTTGAGTTGGCAAATGGAGATGGCCAACTCAAGCTTAAACACAACACAACTGCCACAA CTCAAATATCGGAGTCTGAAACTGCGAAGAACTCTCAGAAACATGCAACTTCTTGGGGGAATGGGAAGTCACTGAAGGCAAAAGTCCTGTCGCGAGTTTT CTCCGAGGACTACGAGAGAGTGAAGAGGAGCATCAACATATTAGATCCTCGGGGGCCGAGAGTCCGGAGATGGTCCAAGATTTTCTTAGTGGCATGCTTA GTCTCTTTGTACCTTAGATGGAACTTCTGGCTTGACCTCTTTGCAGCGCTCCCACTCCCTCAGGTGCTAATTTGGGTGATCTTACCAAACCTAGGTGGTT CGACCATGTCCAACACGAAAAACGTGCTCCGGTTGATCATCATCTTACAGTACATTCCGAGACTGTTCCTGATATTCCCACTCTCTTCCCAAATTGTCAA GGCTACTGGTTTTTTGACAGAAACAGCTTGGGCTGGAGCTGCTTATAACTTGATGCTTTACATGCTGGCAAGCCATGTTTTAGGAGCTTGTTGGTACCTT CTGTCAATAGAGAGACAAGAAGCATGCTGGATGAGTGCCTGCGACAGGGAGAAACCATCTTGCAAAGTCGACTTCTTTGACTGTCACATGGTTGGTAACT CTCTTAGGGACTCCTGGTTCAATACAAGCAACTCGTCGAGACTTTGCAAACCGGACAGTGGGTTCTACGAGTTTGGAATCTACGGTGATGCAGCAACTTA TGGCGTCTCGACAACATCTTTCGTCGACAAGTACTTCTACTGCCTCTGGTGGGGCTTAAGGAACCTCAGCTCCCTCGGGCAGAATCTTTCAACGACCACT TATGTTGGGGAGATAGCCTTTGCCATTATTATTGCAACTCTTGGTCTGGTTCTCTTTGCTTTGCTCATTGGGAATATGCAAACATACTTGCAATCAACGA CGGTTAGGCTAGAAGAGTGGCGGATCAGAAGGACTGACACAGAACAGTGGATGCACCACAGGCAGCTCCCTCCTGACCTCAGGAATTCCGTCAGGAAATA TGACCACTACAAATGGCTCGCCACCCATGGTGTTGATGAAGAAACTCTCCTCAAGGGCCTCCCTTTGGACCTCCGCAGAGACATCAAACGCCACCTCTGC CTCGATCTAGTTCGCCGTGTACCGCTGTTCGATCAAATGGACGAGAGAATGCTGGACGCAATGTGCGAGAGGCTGAAACCGACACTATCCACGCAAGGCA CCGTCCTCGTCCGAGAAGGAGACCTGGTGGACGAAATGCTGTTCGTAATCCGCGGCAACCTCGATTCCCACACCACCAACGGCGGGAGAACAGGGTTCTT CAACTCCTGCAGGATGGGCCCTGGCGAATTCTGCGGGGAGGAGCTGCTGACGTGGGCGCTGGACCCGCGGCCGATCGTGATGCTCCCTACCTCGACCCGT ACGGTGAAGGCCATCTCGGAAGTGGAGGCGTTCGCCCTCAGAGAGGACGACCTCCAGTTCGTGGCTTCGCAGTTCAGGAGGCTGCACAGCAAGCAGCTGA GGCACACGTTCAGGTTTTATTCTCACCAGTGGAGGAGTTGGTCGGCATGTTTCGTGCAGGCTGCGTGGCGGAGGTACAAGAGGAGGAAGGAATCGGCGGC GGTGAGGTGCAGGGAGATGGCCGGGAGAAGGGTGAAGCATTCTTCTTCTGGAAGCGTTATGGCTTCGTTGCAGAAGCCGTCGGAGCCTGACTTTTCTGCT GACGCGGATTGA
AA sequence Show only first row Show all	>Lus10041319 pacid=23179650 polypeptide=Lus10041319 locus=Lus10041319.g ID=Lus10041319.BGIv1.0 annot-version=v1.0 MACSNSRSVRFRDDLELANGDGQLKLKHNTTATTQISESETAKNSQKHATSWGNGKSLKAKVLSRVFSEDYERVKRSINILDPRGPRVRRWSKIFLVACL VSLYLRWNFWLDLFAALPLPQVLIWVILPNLGGSTMSNTKNVLRLIIILQYIPRLFLIFPLSSQIVKATGFLTETAWAGAAYNLMLYMLASHVLGACWYL LSIERQEACWMSACDREKPSCKVDFFDCHMVGNSLRDSWFNTSNSSRLCKPDSGFYEFGIYGDAATYGVSTTSFVDKYFYCLWWGLRNLSSLGQNLSTTT YVGEIAFAIIIATLGLVLFALLIGNMQTYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPDLRNSVRKYDHYKWLATHGVDEETLLKGLPLDLRRDIKRHLC LDLVRRVPLFDQMDERMLDAMCERLKPTLSTQGTVLVREGDLVDEMLFVIRGNLDSHTTNGGRTGFFNSCRMGPGEFCGEELLTWALDPRPIVMLPTSTR TVKAISEVEAFALREDDLQFVASQFRRLHSKQLRHTFRFYSHQWRSWSACFVQAAWRRYKRRKESAAVRCREMAGRRVKHSSSGSVMASLQKPSEPDFSA DAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	0	1
					Lus10025164 [exp]	4.1	0.8821
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	6.8	0.8791
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	8.3	0.8790
AT3G24520	HSF	AT-HSFC1	heat shock transcription facto...		Lus10034907 [exp]	11.2	0.7565
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	12.0	0.8641
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	12.6	0.8274
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	12.8	0.8509
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	13.5	0.8596
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	13.6	0.8620
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	15.3	0.8575

Compare expression of checked genes

Lus10041319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.