Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037393 [exp] 309 / 1e-109 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1) Lus10026077 [exp] 142 / 3e-43 ND / Lus10002306 [exp] 138 / 1e-41 ND / Lus10016101 [exp] 77 / 4e-19 ND / Lus10016100 [exp] 75 / 2e-18 ND / Lus10030840 [exp] 50 / 5e-08 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10030646 [exp] 49 / 9e-08 AT1G24020 189 / 3e-62 MLP-like protein 423 (.1.2) Lus10015339 [exp] 45 / 4e-06 ND 41 / 6e-05 Lus10024991 [exp] 45 / 4e-06 AT2G26040 264 / 7e-91 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088100 [exp] 176 / 2e-57 ND / Potri.004G032900 [exp] 57 / 2e-10 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 55 / 6e-10 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.011G127800 [exp] 52 / 1e-08 ND / Potri.010G000600 [exp] 51 / 2e-08 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.008G212500 [exp] 45 / 3e-06 AT1G24020 52 / 6e-09 MLP-like protein 423 (.1.2) Potri.008G212400 [exp] 44 / 6e-06 ND / Potri.008G213100 [exp] 42 / 6e-05 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.013G131000 [exp] 40 / 0.0002 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Potri.010G096000 [exp] 39 / 0.0003 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10041320 pacid=23179717 polypeptide=Lus10041320 locus=Lus10041320.g ID=Lus10041320.BGIv1.0 annot-version=v1.0 ATGATAAGAGGGGAGATATGCCACGAAGCTCCGGTGGAAGCTCCGGCGAACAAGGTGTGGGAAGCGTACCGAGGCCTTCAACTTCCCCATCTGATTAACG ACTTGTTGCCTCACCTCCTCGGCACCGTCCAAGTCTTGGAGGGTGATGGCTCCGCCGGCACACTCATTCACCTCACTTTTCCTCCAGGAACTCCTGGGAT CGGGTACATGAAAGAAGTGTACAGAATAATGGACGACGAGAAGAGGGTGAAAGAAACTGAACAAATTGAAGGAGGATACCTTCATCTGGGATTTCACAGT TTCGTGATCCGCTTGGAAATCATCGACAAACATCCACAGAAGAACACGATCATCAGATCCATTATCAAGTACGAGGTGGCTGATGACTCCAATACTCACC TCGTATCTCTGGTTTCCATTCAACCACTCGTTACTCTTTCTCAAGTTGTTGCTGATTACATCCTCAACAACAGCCATACCAATTCATAA
AA sequence Show only first row Show all	>Lus10041320 pacid=23179717 polypeptide=Lus10041320 locus=Lus10041320.g ID=Lus10041320.BGIv1.0 annot-version=v1.0 MIRGEICHEAPVEAPANKVWEAYRGLQLPHLINDLLPHLLGTVQVLEGDGSAGTLIHLTFPPGTPGIGYMKEVYRIMDDEKRVKETEQIEGGYLHLGFHS FVIRLEIIDKHPQKNTIIRSIIKYEVADDSNTHLVSLVSIQPLVTLSQVVADYILNNSHTNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041320 [exp]	0	1
AT1G63060			unknown protein		Lus10001796 [exp]	1.4	0.9419
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	1.7	0.9044
AT1G63060			unknown protein		Lus10002567 [exp]	2.0	0.9419
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	2.0	0.8874
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	4.9	0.8428
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	5.0	0.8661
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	5.5	0.8349
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	6.0	0.8498
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	6.5	0.8469
AT1G18760			Zinc finger, C3HC4 type (RING ...		Lus10006279 [exp]	6.6	0.7495

Compare expression of checked genes

Lus10041320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.