Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60710 671 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 600 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 566 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 522 / 2e-177 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 221 / 7e-62 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 169 / 4e-44 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 161 / 3e-41 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 152 / 2e-38 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT4G38140 41 / 0.0006 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021458 [exp] 810 / 0 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 800 / 0 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 625 / 0 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 608 / 0 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 429 / 4e-146 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 264 / 5e-84 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 166 / 7e-43 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 153 / 1e-38 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 128 / 2e-32 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010350 [exp] 766 / 0 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 697 / 0 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 683 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 441 / 1e-145 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 439 / 6e-145 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 180 / 2e-47 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 148 / 1e-37 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.016G001300 [exp] 145 / 1e-36 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G450700 [exp] 46 / 2e-05 AT3G61460 71 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.011G150800 [exp] 46 / 2e-05 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10041321 pacid=23179942 polypeptide=Lus10041321 locus=Lus10041321.g ID=Lus10041321.BGIv1.0 annot-version=v1.0 ATGGTAGATCTGACGAGCCAGTGGAGGAAGGCGAAACTGTCGCTTGGTTGCTTTCACGTTCCTCGAACTCTCGAGCAGCAAGACGAGGGGACGGACCACC GCCAGCAGCAGCTGCATTCTTCTTTCCCGCCGAGTACAATCTCCGACGCCGCCGTGGCTGCTGCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCT GGTCTCCGCCACTCCCACACCGTCGTCTTCTGAGTTTCTCTTCAAGTCCGGAGAGAGGCTATGCCCAATTTGCCTCACCACTGTGAAGGCAGGACGAGGA CATGCCATCTTTACTGCAGAATGCTCCCACTCTTTCCACTTCCACTGCATTGCATCTAATGTCAAGCATGGGAAAGAGATTTGTCCTGTATGCCGAGCAA AATGGAAAGAAGTTCCTTCCGAATCTGCTAAGGTTGATAATTCCAATGGAATTCGAAGGATCAACAATGTGTCCTTGACTCAGCTACAAAGTGATAGCTT GATGAATATGGTGAGACGTATCCCTCCACCACGCCTAGATATTAACCAGCACGGTTCATCGCATCATCAGATTCAGGAACCAGCCATCTTCAATGATGAC GAGGCCTTAGATCGCGACCAACCTTCTATCACTGTTGAAAGAAGTTTATCATCAGCTCATGTTTCTGGGGATGACAGTAATCGAAGGTCCATGGAGATCA AAACATATCCTGAATATCCAGCAGTTTCGAGATATGCCTCTCATAACGATTTCTCTGTGTTAATTCATCTCAAGGCTCCACCTAAGGTAGAAAGCAGAAA CAACTGTAAGTCTCTTTCTCAACAGGGTTCTTGTGCTCCAGTTGATCTTATCACAGTGCTTGATACAAGTGGCAGCATGTCCGGCACAAAGCTTGCACTT CTCAAGCGAGCCATGGGATTTGTGATACAGCAGCTTGGCCCTTCTGACAGGCTCTCTGTGGTTTCTTTCTCCTCTTCTGCAAATCGCAGGTTTCCTCTAC GTCGTATGACAGAGACTGGAAGGCAGGAGGCATTACAAGCTGTTAATTCGTTAACCTCAAATGGAGGTACTAACATCGCTGAGGGATTGACAAAGGGTTT GAAGGTACTTTTGGATCGTAAATGGAAGAATCCAGTAAGCAGTATTATTCTTCTCTCCGATGGTCAGGATAGACATACCATCCAAAGTCCGGGTGGAAGT AGATTAAAACCGGATTATAAAGCTCTTCTGCCTGCTTCAGCTCATTGCTATCCATGTTCAGGCGTACAATTCCAAGTACATACATTCGGATTCGGTACTG ATCATGATGCTGGTGCAATGCATTCAATAGCTGAGGCATCTGGGGGAACCTTCTCATTCATCGAAGCCGAGAGTGTGATCCAGGATGCATTTGCTCAGTG CATTGGAGGATTGTTGAGTGTAGTAGTACAGGAGTTGCAGGTCAAAATTGATTGTGTTAATCCAAGTTTACGAATTCGATCAATCAACGCAGGTAGTTAC ACAACTAGCTTGTCAGTTGATGCCAGAGCAGGGTCTACTGATGTCGGGGATTTGTACGCTGAAGAAGAACGGGACATCTTAGTGTCATTGGATATTCCAG TTGACATATCTTCAGGCATCGAAATGTCATTACTAAATGTTAAATGCATCTTCCGGGATCCCATGACAGATGAGACGAGGGAAAACAAAGGATCCGGTCC ATTAAAGATCCAGATCCCCGAAGAGGTTGGTGTTCAAGCAATAGGAGTTGAAGTGGATAGGCAGAGGAATAGGCTACGTGCAGCAGAGGCTATGGCTGAA GCTAGAGCTGCAGCTGAAAAAGGTGAACTCTCTCTTGCAGTCTTAATCCTCGATAGCTGCCGGAAGGCATTATCGGAAACTGCATCGGTCCGGGCAGGCG ACCAGTTATGCACAACACTGTGCTCCGAGTTAAGAGAGATGCAGGAAAGGATGGCGAATCGTGCAGTATACGAGAGGTCAGGAAGAGCTTATGTTCTTTC TGGTTTGAGCTCACACTCATGGCAAAGAGCAACTGCTAGAGGTGATTCGACGGACAGTGGAGCCCTTACGCAATATTACCAGACCCCATCGATGGTGGAC ATGGTGGACCGTTCTCAGACCTTTATGTTGTTGGGGAACCAGGCATCTGAGAGAAAACTGAGGCGAGAGCCTTCGTTTCCAGCTAGAACAGTGGATCCAA GGTAA
AA sequence Show only first row Show all	>Lus10041321 pacid=23179942 polypeptide=Lus10041321 locus=Lus10041321.g ID=Lus10041321.BGIv1.0 annot-version=v1.0 MVDLTSQWRKAKLSLGCFHVPRTLEQQDEGTDHRQQQLHSSFPPSTISDAAVAAASSSSSSSSSSSLVSATPTPSSSEFLFKSGERLCPICLTTVKAGRG HAIFTAECSHSFHFHCIASNVKHGKEICPVCRAKWKEVPSESAKVDNSNGIRRINNVSLTQLQSDSLMNMVRRIPPPRLDINQHGSSHHQIQEPAIFNDD EALDRDQPSITVERSLSSAHVSGDDSNRRSMEIKTYPEYPAVSRYASHNDFSVLIHLKAPPKVESRNNCKSLSQQGSCAPVDLITVLDTSGSMSGTKLAL LKRAMGFVIQQLGPSDRLSVVSFSSSANRRFPLRRMTETGRQEALQAVNSLTSNGGTNIAEGLTKGLKVLLDRKWKNPVSSIILLSDGQDRHTIQSPGGS RLKPDYKALLPASAHCYPCSGVQFQVHTFGFGTDHDAGAMHSIAEASGGTFSFIEAESVIQDAFAQCIGGLLSVVVQELQVKIDCVNPSLRIRSINAGSY TTSLSVDARAGSTDVGDLYAEEERDILVSLDIPVDISSGIEMSLLNVKCIFRDPMTDETRENKGSGPLKIQIPEEVGVQAIGVEVDRQRNRLRAAEAMAE ARAAAEKGELSLAVLILDSCRKALSETASVRAGDQLCTTLCSELREMQERMANRAVYERSGRAYVLSGLSSHSWQRATARGDSTDSGALTQYYQTPSMVD MVDRSQTFMLLGNQASERKLRREPSFPARTVDPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	0	1
					Lus10027544 [exp]	1.0	0.8204
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	3.5	0.7753
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041226 [exp]	3.5	0.8047
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	5.0	0.7791
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	5.5	0.8086
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	5.9	0.7616
AT2G26520			unknown protein		Lus10032762 [exp]	11.0	0.8130
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	11.2	0.7386
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	14.1	0.7298
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10017529 [exp]	19.4	0.6957

Compare expression of checked genes

Lus10041321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.