Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 198 / 2e-55 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 187 / 5e-51 Protein kinase superfamily protein (.1) AT3G21630 154 / 8e-40 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G28250 127 / 1e-30 NCRK Protein kinase superfamily protein (.1.2) AT3G01840 124 / 9e-30 Protein kinase superfamily protein (.1) AT1G51940 119 / 8e-28 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT5G18910 112 / 6e-26 Protein kinase superfamily protein (.1) AT2G28590 111 / 6e-26 Protein kinase superfamily protein (.1) AT4G02010 112 / 1e-25 Protein kinase superfamily protein (.1) AT3G24790 109 / 1e-25 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037389 [exp] 1094 / 0 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1) Lus10019661 [exp] 248 / 3e-73 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 247 / 7e-73 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 244 / 3e-72 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 200 / 1e-55 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016299 [exp] 198 / 6e-55 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016793 [exp] 155 / 7e-40 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10021889 [exp] 150 / 2e-38 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022345 [exp] 150 / 4e-38 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010300 [exp] 580 / 0 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 247 / 2e-73 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 243 / 2e-71 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 237 / 3e-69 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.007G032100 [exp] 234 / 7e-68 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 223 / 3e-64 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G085400 [exp] 187 / 5e-55 AT2G33580 163 / 4e-46 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 193 / 5e-53 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 185 / 2e-50 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 181 / 6e-49 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10041323 pacid=23179935 polypeptide=Lus10041323 locus=Lus10041323.g ID=Lus10041323.BGIv1.0 annot-version=v1.0 ATGTCAGTCCTTTGGTTTTTGGTGTTTCTGTGCACAATCTTCTCCTTCACTTCTTCAGTTTCTGCTCAGCAACACTATGGCTCCAAAGATTGTGCTGCGG ATTCCAGCTTCCCTGGTTCAAGATACACCTGCAACAGAACCAGCAGCAATTCTTGTGAGACATTTGTAATCTTCAGAGCCAACCAACACTTCAACACACT GGAGACTGTCTCCAATCTCTTACAGACACACCAGATGAATGAATCTCTCCAGAATCTGAATCGAATCACATCAAACAAGGAGATTCTAGAGCCGGGAAGA GAAGTTTTCGTTCCGGTCACATGTTCGTGTTCAGGTCAGTACTACTTCCAAGCAGATTTGAGCTACACAGCTCCTGAGGACACAAGTGTGGTAGATGTTG CCTGTTCTGTCTTTGAGAGCTTGGTAACTTATCACACAATCATGCTTGAAAATCATTTATTAGGTAGTAGTAGTCATGATGATCATGTCTCTGCCGGCAC TAAACTCCATATCCCTCTCAAATGTGCCTGCCCTTCTAAAAGTGACAAAGATTCAATCTTTAAGTTCCTCACGACATATCCTGTGTTCGAAGGCGATTCA CTGAGTGAAATCAGTGACAAATTTGGCATTTCATCGGAGGATTTGTTTACAGTCAACGGCCTTGACCAACATTGGCAAACCATCTTTCCCAACACAACCC TCTTGATTCCATTCAAAAGCTTTGTACTGATGAATGAGAGTCACTCTCCTCCTCCTCCTCCACCTCCAACTCCCACGTTTCTCCCCACGAACACGATCGA GAGGCCACCATCATCGAGCAATAAAGATTCAAGCTTTAAGAGCTTGTACATTGCAGGATCAGTTATTGGTTTCTTCCTAGTAGTTGCTGCAATGTTTTCC TTCAGTTTATATGTGAAATCCATGAAGAAGGAAAAAATTCAGAAGCTTTTGTCATTCAACTCTCAACTAACTTGCTCCACACCAAAAAGCTCTGCCACAG GGTTAAGCTCCACAACTCCTCCATGCTTGTCCCCTGATCTTCTAGTTGGAATTCTTTACTCACTGAGGAGCTACACCATAGAGGAATTAAGAAGATCTAC GAACAATTTCAGCGAGAAGGTGGGATCGGATGATGAATCATACAAAGGGGTGATTGAAGGAGGAGTGGGAACAGTAATGGTGAAGCCACTGAGGTTTGAG GACATAAGGCAAGTGATTGATGTCCATTCCAGAATAAACCACATCAACATTGTGACATTGGTTGGTGTTTGTTATGGAGACAATGAGATTTCCACTTCTT CTTACATACTTCTTGAGTTGCCTAGCAATGGTTGTTTACGAGACTGCATATTATCGAACTCGCTTCGTTGGCATACGCGAACACAGATCGCATTCGACAT AGCCTCGGGCTTACATTACCTCCACGACTGCATTTTCCCATCATATGCTCATATGAGTGTCAATACTAGGAATGTGTTTGTCACGTCAGATTGGAGGGCT AAGCTGACAAATATCAGAATAACCAACTCCGTAAATGTAGGAGGGTCAGGATGGTTGGCTCCGGAGTACAATGGATTGGCTTCTGAGAAGGTTGACATTT TCGCCTTCGGAGTGGTGCTACTAGAGCTGATATCAGGAAGGGAAGATGAGAGTGGTGATGGGAGATTATTCAAGGAATCACTTGGTTTCCTTGGAGGTGG GGAGGGAGGGTGTTTCGAACAGCTTAGGGGATTCATCGATCCATTTCTCGAAGGAGATTACCCACTCGCTGAGGCGTTGTGTCTAGCTGTACTTGCCAAG ACGTGTGTGGATGATGATCCTTTGCACAGACCGTCCATGGATGATATCCTTAAAGTTCTTGTTAGAATGGTGTAA
AA sequence Show only first row Show all	>Lus10041323 pacid=23179935 polypeptide=Lus10041323 locus=Lus10041323.g ID=Lus10041323.BGIv1.0 annot-version=v1.0 MSVLWFLVFLCTIFSFTSSVSAQQHYGSKDCAADSSFPGSRYTCNRTSSNSCETFVIFRANQHFNTLETVSNLLQTHQMNESLQNLNRITSNKEILEPGR EVFVPVTCSCSGQYYFQADLSYTAPEDTSVVDVACSVFESLVTYHTIMLENHLLGSSSHDDHVSAGTKLHIPLKCACPSKSDKDSIFKFLTTYPVFEGDS LSEISDKFGISSEDLFTVNGLDQHWQTIFPNTTLLIPFKSFVLMNESHSPPPPPPPTPTFLPTNTIERPPSSSNKDSSFKSLYIAGSVIGFFLVVAAMFS FSLYVKSMKKEKIQKLLSFNSQLTCSTPKSSATGLSSTTPPCLSPDLLVGILYSLRSYTIEELRRSTNNFSEKVGSDDESYKGVIEGGVGTVMVKPLRFE DIRQVIDVHSRINHINIVTLVGVCYGDNEISTSSYILLELPSNGCLRDCILSNSLRWHTRTQIAFDIASGLHYLHDCIFPSYAHMSVNTRNVFVTSDWRA KLTNIRITNSVNVGGSGWLAPEYNGLASEKVDIFAFGVVLLELISGREDESGDGRLFKESLGFLGGGEGGCFEQLRGFIDPFLEGDYPLAEALCLAVLAK TCVDDDPLHRPSMDDILKVLVRMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10041323 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10035766 [exp]	3.5	0.7012
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10037341 [exp]	3.5	0.7330
AT2G41705			camphor resistance CrcB family...		Lus10028071 [exp]	10.5	0.7013
					Lus10043166 [exp]	17.5	0.6834
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	18.2	0.5893
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	20.3	0.6324
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	26.7	0.6578
AT5G07670			RNI-like superfamily protein (...		Lus10031165 [exp]	40.3	0.5807
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	43.7	0.6698
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10009146 [exp]	44.0	0.6206

Compare expression of checked genes

Lus10041323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.