Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016111 [exp] 205 / 3e-66 ND / Lus10000191 [exp] 162 / 8e-50 ND / Lus10029851 [exp] 161 / 2e-49 ND / Lus10039879 [exp] 161 / 2e-49 ND / Lus10014099 [exp] 159 / 9e-49 ND / Lus10019813 [exp] 157 / 5e-48 ND / Lus10014101 [exp] 156 / 1e-47 ND / Lus10019815 [exp] 155 / 1e-47 ND / Lus10028949 [exp] 155 / 3e-47 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G153100 [exp] 210 / 2e-68 ND / Potri.009G009700 [exp] 197 / 6e-64 ND / Potri.014G081800 [exp] 166 / 1e-51 ND / Potri.014G082700 [exp] 162 / 5e-50 ND / Potri.002G158600 [exp] 160 / 4e-49 ND / Potri.019G100100 [exp] 156 / 1e-47 ND / Potri.002G158700 [exp] 154 / 6e-47 ND / Potri.003G126200 [exp] 152 / 4e-46 ND / Potri.014G081900 [exp] 152 / 4e-46 ND / Potri.014G082000 [exp] 151 / 8e-46 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041324 pacid=23180007 polypeptide=Lus10041324 locus=Lus10041324.g ID=Lus10041324.BGIv1.0 annot-version=v1.0 ATGGAAACCTCACTCGTAAAGTCGCCGACGATAACATTTGTCATCATCTTCCTGTTCATATCCTACTCCTCCCTTCTCTTCGTCACCGCCGACGATCTCT CCGGATGCGGCGGCGACTGCGGCAGCTCAAACGAGTGCAAGGGACAGCTCGTATGCAAAGGCGGAAAGTGCAACGATGATCCCGACGTCGGGACCCATCT CTGCAAAGGTAACGACCCCGACGGCGGCGGAAAAAAGGACGGCCCTAAACACTTGAAGAAGAACTCCCACGACAAGCACAGAGGCGACGGCGGCGGCGGA GATGACGACGGAGGCGATGGGGGAGACTGCAGCTCACATGGGACAATGCAGTGCAAAAACCATAGCTACAAGACGTACAAGTGCTCCCCGCCGGTGACGG AGAATACCAAGGCCACTTTGACCGTCAACAGCTTTGCCAAAGGCGGCGACGGCGGAGCTCCCTCGGAGTGCGACGGGAAATACCACGATAACGACGACCA CGTTGTGGCGCTCTCCACTGGCTGGTACAAGGGTGGATCAAGATGTGGAAAAAAGATAAGAATAATGGCGAAGAATGGAAAACATACCGAGGCAACGGTG GTGGACGAGTGCGATTCGATGGAAGGGTGCGATCACGACCATGCGGGGCAACCTCCGTGCAAAAACAACATCGTCGATGGATCATCGTCGGTGTGGAAAG CTTTGGGGCTGAACCAGGATGATGGTGAAGTCCCCGTTACTTGGACCATGGTCTAG
AA sequence Show only first row Show all	>Lus10041324 pacid=23180007 polypeptide=Lus10041324 locus=Lus10041324.g ID=Lus10041324.BGIv1.0 annot-version=v1.0 METSLVKSPTITFVIIFLFISYSSLLFVTADDLSGCGGDCGSSNECKGQLVCKGGKCNDDPDVGTHLCKGNDPDGGGKKDGPKHLKKNSHDKHRGDGGGG DDDGGDGGDCSSHGTMQCKNHSYKTYKCSPPVTENTKATLTVNSFAKGGDGGAPSECDGKYHDNDDHVVALSTGWYKGGSRCGKKIRIMAKNGKHTEATV VDECDSMEGCDHDHAGQPPCKNNIVDGSSSVWKALGLNQDDGEVPVTWTMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041324 [exp]	0	1
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	5.8	0.7626
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	7.1	0.7112
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	7.7	0.7448
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	10.1	0.7298
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	10.2	0.7280
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	13.0	0.7464
AT2G25270			unknown protein		Lus10014341 [exp]	13.0	0.7368
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	13.4	0.7113
					Lus10003759 [exp]	15.9	0.6582
					Lus10033874 [exp]	17.5	0.7057

Compare expression of checked genes

Lus10041324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.