Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60740 1527 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1341 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53390 1244 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31770 193 / 2e-51 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT1G17840 191 / 2e-50 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G25620 186 / 2e-50 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G51500 186 / 5e-49 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT5G06530 186 / 6e-49 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G21090 186 / 7e-49 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT4G27420 185 / 8e-49 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016115 [exp] 1753 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 1652 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10038714 [exp] 1242 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 1238 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023020 [exp] 1217 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10023199 [exp] 951 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10033315 [exp] 196 / 2e-54 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 197 / 7e-53 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 196 / 1e-52 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058900 [exp] 1620 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.003G169000 [exp] 1619 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.010G225200 [exp] 1377 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G126100 [exp] 1365 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.004G236500 [exp] 203 / 9e-55 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 199 / 1e-53 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 191 / 9e-51 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.013G111900 [exp] 188 / 8e-50 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 188 / 9e-50 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.009G051300 [exp] 187 / 4e-49 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10041325 pacid=23179761 polypeptide=Lus10041325 locus=Lus10041325.g ID=Lus10041325.BGIv1.0 annot-version=v1.0 ATGAGCAGAGAGAAGGCCATACATCGACGCCGATGCGGTCGCCGGCCTCTCTCTGCTTTTTCGGCCTCCTCCTCGCCACAGTTGTTGCTGGTGGCGCTGC TGTTATTTCCACCGTCGGTATCTTGCCAACGCACCGGCGGCAATGACGCAACAGATGAGCTCATATCACGGGAACTTTACAAAAGTTTTGCTAATTTCAC CGATGTCTTCAAGCCGGACATCAAGAAGCATTTTGGGTTCTGCATTACGGACGTGGATGCTGATTGGAATGCCGCATTCAATTTCTCCACGGATCCAAAA TTCATATCCAATTGTGCTAAAAGAACCAAAGGCGACATGACCAAACGTCTATGCACAGCAGCGGAAATGAAGTTCTACTTTAACACTTTCTTCCAGAAGG ATTCACATAGGTCTAATTATTTGCAACCCAACAGAAACTGTAACCTGACTTCTTGGGTTTCTGGATGCGAGCCGGGATGGGCTTGTAGCGCTGGCCAGGG AAAGAAAGTCGACTTGAAAAACTCCAAAGACATACCTGCTAGAACTACTGATTGTGATACTTGTTGTGAGGGTTTTTTCTGCCCTCATGGCCTCACTTGC ATGATACGTGCCTACTGTCCACTTTCCAAGCTCAATAGTGCTTCAGGCGAATGTGAACCATACCGTTACCAACTTCCTCCTGGAAAGCCAAACCATACTT GTGGGGGAGCTGATACTTGGGCAGATATCGCAAGTACTCGTGACGTATTCTGTTCAGCAGGATCATACTGTCCATCTACTATCCAACAACTTCCTTGCAC TAAAGGGGACAATGACTTTTTGGTTTCAGGCATTACTGCAGGACTGGTTCCACACATCAATCAGGTGGGTTTCCTTTTCCTCCATGGATGTTTCAAGTTG GCTAAATGTGTTCCAAAATCGACAACCCAAAATATAAGCGCGTACGGAATCTTGCTTTTTGCTGGAATTGTTTTTCTGCTCATCATTATCTATAATTGTT CTGATCAAGTTCTTGCAACTCGGGAGAAAAGACTAGCAAAAACCAGAGAGAAAGCAGTTCAAAGTGTAAGAGAAACTCAATCACGTGAAAAGTGGAAATC TACAAAGGAGGTAGCTATGAAGCACGCAAGCGATATCAAAGCTCAGTTTTCCAGAACATTCTCTCGTGTAAAATCAAAAAAAGAAGACACCGGTTCTGGA ATAAAAGGAAAGAAGAAAGAAAAGGGAAACCTCACGAACATGCTGCATGAAATGGAGGCAAATCCCGATGGTCATGAAGGCTTCAACCTGGAGATTGGAG ACAAAAATATTAAGAAACATGCGCCGAAGGGTAAGCAGTTACATACTCAGAGCCAAATGTTCAGATATGCATATGGTCAAATTGAAAGGGAAAAGGCTAT GCAGGAGCAGAATAAGAACATGACATTTTCTGGGGTGATCTCGATAGCTAATGATATTGAAATTAGGAAAAGACCCACTATTGAGGTTGCTTTTAAGGAC CTAACCCTCACTTTGAAAAGCAAAAACAAACACCTATTAAGGTGTGTGACTGGCAAGTTATCACCTGGGCGAGTTTCTGCTGTCATGGGGCCATCTGGGG CTGGCAAAACAACCTTTCTTTCTGCATTGACTGGAAAAGCTCCTGGGTGCCATGTGACAGGAATGGTTCTTGTAAATGGTAAAGCAGATCCGATCCAAGC ATACAAGAAAATAATTGGTTTTGTGCCCCAAGATGACATTGTGCATGGGAATTTATCAGTAGAAGAGAATCTTTGGTTTAGTGCAAGATGCAGGCTCTCA GCTGATCTACCAAAACAGGAAAAGGTTCTAGTAGTTGAACGAGTCATCGAAGCCCTAGGGCTTCAACCAGTGAGGGATTCTCTTGTGGGGACAGTGGAAA AGCGAGGAATTTCTGGAGGTCAAAAGAAACGAGTAAATGTGGGGCTGGAAATGGTAATGGAACCTTCACTTCTTATATTAGATGAGCCAACATCTGGCTT GGATAGCTCTTCTTCCCAGCTACTGCTTAGGGCTCTTAGACGTGAAGCTCTTGAAGGAGTAAACATTTGCATGGTTGTGCATCAACCAAGCTACGCATTA TTTAGGATGTTTGATGATTTGATACTTCTCGCAAAAGGTGGATTGACAGCATACCATGGACCAGTAAAGAAAATTGAAGAGTATTTTGCTGGCCTTGGAA TAATTGTTCCTGATCGCGTGAATCCTCCAGATTACTATATTGACATATTGGAGGGAATGCTGAAACCTAGCACTGGAGTGCACTACAAACAACTTCCAGT TAGATGGATGCTTCATAATGGATACCAAGTTCCCATGGACATGCTTAAGAGTACTGAAGAACAAGAAGGCCCTGCAGGGGAAACTTCCAATCAAGCAGAA GGACCTCCTAGTGAAACAACGTCAGAAACTCAATCGTTTGCTGGAGAATTTTGGCAGGATATGACGTCCAACGTTGAGTTCAAGAAAGACGGCATGAGTC ATAGTTTCTTGAAGACGGTTGACCTTTCCGGAAGAACAACACCTGGCATAGTTCAGCAGTACAGATACTTCCTCGGCAGGGTCGGTAAACAGAGGTTACG GGAAGCAAGGACACAAGCTGTTGACTATCTGATTTTATTGTTGGCTGGTATTTGCTTAGGAACACTAGCTAAAGTTAGCGACGAAACATTTGGGTCAGTT GGTTACACATACACCATCATCGCCGTTTCTCTACTGTGCAAGATTGCCGCTTTGAGATCATTTGCTTTGGATAAGTTACACTATTGGAGGGAGAGAGGGT CTGGGATGAGCAGCCTAGCTTACTTTCTTTCAAAGGACACAATCGACCATTTCAACATCATCATTAAGCCCGTTGTGTATCTATCCATGTTCTACTTCTT CAACAATCCAAGATCAAGTATTTATGACAATTACATTGTCTTGGTCTGCCTGGTGTATTGTGTCACCGGAATGGCTTATATATTGGCTATTTCCTTTGAA GCTAGTCCAGCTCAACTGTGGTCAGTGCTACTTCCAGTTGTATTAACTCTAATCGCAACCCAAGAAGACACTGGCATAGTTGGCCGCCTATCCGACTTAT GCTACACCAAATGGACATTGGAAGCATTTGTTATAGCAAACGCCAAAAGATACAACGGTGTATGGTTGATAACACGCTGCGGTTCACTCATGGAAAGTGG GTATGATCTCAATCATTGGAACCGTTGCTTAATCCTTCTTGGCCTTACCGGTCTGGCTAGTCGCGTTGTTGCGTTCATTGTGTTAGTTACCTGGCAAAAG AGGTGA
AA sequence Show only first row Show all	>Lus10041325 pacid=23179761 polypeptide=Lus10041325 locus=Lus10041325.g ID=Lus10041325.BGIv1.0 annot-version=v1.0 MSREKAIHRRRCGRRPLSAFSASSSPQLLLVALLLFPPSVSCQRTGGNDATDELISRELYKSFANFTDVFKPDIKKHFGFCITDVDADWNAAFNFSTDPK FISNCAKRTKGDMTKRLCTAAEMKFYFNTFFQKDSHRSNYLQPNRNCNLTSWVSGCEPGWACSAGQGKKVDLKNSKDIPARTTDCDTCCEGFFCPHGLTC MIRAYCPLSKLNSASGECEPYRYQLPPGKPNHTCGGADTWADIASTRDVFCSAGSYCPSTIQQLPCTKGDNDFLVSGITAGLVPHINQVGFLFLHGCFKL AKCVPKSTTQNISAYGILLFAGIVFLLIIIYNCSDQVLATREKRLAKTREKAVQSVRETQSREKWKSTKEVAMKHASDIKAQFSRTFSRVKSKKEDTGSG IKGKKKEKGNLTNMLHEMEANPDGHEGFNLEIGDKNIKKHAPKGKQLHTQSQMFRYAYGQIEREKAMQEQNKNMTFSGVISIANDIEIRKRPTIEVAFKD LTLTLKSKNKHLLRCVTGKLSPGRVSAVMGPSGAGKTTFLSALTGKAPGCHVTGMVLVNGKADPIQAYKKIIGFVPQDDIVHGNLSVEENLWFSARCRLS ADLPKQEKVLVVERVIEALGLQPVRDSLVGTVEKRGISGGQKKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYAL FRMFDDLILLAKGGLTAYHGPVKKIEEYFAGLGIIVPDRVNPPDYYIDILEGMLKPSTGVHYKQLPVRWMLHNGYQVPMDMLKSTEEQEGPAGETSNQAE GPPSETTSETQSFAGEFWQDMTSNVEFKKDGMSHSFLKTVDLSGRTTPGIVQQYRYFLGRVGKQRLREARTQAVDYLILLLAGICLGTLAKVSDETFGSV GYTYTIIAVSLLCKIAALRSFALDKLHYWRERGSGMSSLAYFLSKDTIDHFNIIIKPVVYLSMFYFFNNPRSSIYDNYIVLVCLVYCVTGMAYILAISFE ASPAQLWSVLLPVVLTLIATQEDTGIVGRLSDLCYTKWTLEAFVIANAKRYNGVWLITRCGSLMESGYDLNHWNRCLILLGLTGLASRVVAFIVLVTWQK R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	0	1
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	1.0	0.9208
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	1.4	0.9149
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	4.6	0.9091
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	8.5	0.9014
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	9.9	0.9013
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	10.2	0.8723
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	10.7	0.9050
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	11.0	0.8923
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	13.3	0.8991
AT2G04360			unknown protein		Lus10012308 [exp]	14.0	0.9064

Compare expression of checked genes

Lus10041325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.