Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56550 702 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 429 / 9e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 421 / 1e-140 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 417 / 8e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G34160 415 / 2e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 416 / 5e-136 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 401 / 4e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 402 / 5e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 396 / 3e-130 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 395 / 4e-130 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037387 [exp] 1158 / 0 AT3G56550 700 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041327 [exp] 651 / 0 AT3G56550 406 / 3e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 413 / 2e-137 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 407 / 2e-134 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 405 / 5e-134 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 404 / 1e-133 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 403 / 6e-133 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029401 [exp] 399 / 4e-132 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 397 / 3e-131 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029500 [exp] 835 / 0 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G199800 [exp] 437 / 3e-147 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 429 / 5e-144 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 429 / 2e-143 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 417 / 7e-139 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G208000 [exp] 414 / 5e-137 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G074500 [exp] 411 / 2e-136 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 406 / 1e-134 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 405 / 3e-134 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 405 / 1e-133 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041326 pacid=23179821 polypeptide=Lus10041326 locus=Lus10041326.g ID=Lus10041326.BGIv1.0 annot-version=v1.0 ATGTTCGATACTGCAAAAGCAAATGCAATTCTCAAGCTGTTGCAAGGATGCAACAACTTCACCAGGTTTCGCAAAATCCACGCCCACGTCATCGTCAACG GCCTCGACTGCGACCCCGCCATTTCCACCCAGCTCATTACCTTCTGTGCGATCTCCGTTTCGGGTTCTTTACCTTACGCCCAACACCTGTTCGATAAAAT GCCAGACCCGCCTACTCAGGCTTGGAATTCCATCATCAGAGGCTTTTCCCAGAGCCCTTCTCCTCTGTTAGCTCTCTCTTACTACAACCGCCTACTACAA CTCTCTCATTCGCCTCTATCTCGCTGCCGCGACACTTACACCTTCACGTTCGCTCTCAAAGCCTGCGAGAGACTCCATGCTCACCCCAAGTGCAGAGAGA TTCATGGATCCATACTCAGAAGCGGTTACCATACCGATACTGTGGTGTGCACTGGTCTGCTCAGGTGTTACTCTCGGAACGGAGCTGTTGAAGACGCACG TTGCGTGTTTGATGAAATGTCTGACAGGGATTTGGTAGCGTGGAACGCAATGATTTCGTGCTATTCACAGACTGGACACCACGAACAAGTGATGTCAATG TACGGCATAATGAGGGATGAGAATGTGGCTCTGGATGGATTCTCGCTTGTTGGATTGCTTTCCTCTTGTGCTCATGTGGGTGCTTTGGGATTGGGGATTC AGTTGCACAGGATTGCTTCAGATAAAGGCTTGTTTGGGAATTTGTTCGTGGGAAATGCTCTTATTGATATGTATGCTAAATGTGGTAGCTTGGACGATGC TCTCTCAGTTTTCTATAAAATGAGAAGGAAAGACGTTTTCACCTGGAACTCGATGATTCATGGCTTCGGCATCCATGGACTTGGAAATGATGCTATATCT TTCTTTCGGAAGATGTTGGTGGATGGAATCTGGCCAAATTCCATCACTTTTCTGGGTTTGTTATGCGGCTGTAGCCACCAAGGGTTAGTAGAGCAAGGTG TGGATTACTTCCACCTAATGAGCTCCAAGTTCAATCTGAAACCTGGTATCAAACACTACGGTTGCTTGGTGGATCTGTATGGACGAGCCGGTAAGCTTGA TAAAGCACTCGAGACCATTGAAACTTCCATCAGTGATCAGTTTCGAGATGATCCGGTCTTGTGGCGAATCCTGCTAGGCTCTAGTAAGATCCATAAGAAC GTGGCCTGTGGAGAGAAAGCAATGAGGAATCTGATCAGACTCAACGCAGTAACTGCAGGGGATTGCGTGCTGCTTTCGACTATTTATGCCGGAGCAAACT ACGCCCCGGGGGTCGCGAAAATGAGGAAATCAATCAAGACACTCGGCGTTAAGACCATCCCTGGTTGGAGCTGGATTGAGGTCTCGAACCGAGTTCACAA GTTTGTCGTTGACGACAAGTTGCATCCTGAGATCACAGAGGTGTACCAGAAACTGAAGGAGGTAACGAACCGAGCGGCTTCAGTCGGGTATGTGAAGGAC GAGGATGTAATACTGAACCTGCCTGGAGGGTGTTCGGAGACTTTGAGTTCATGTCACAGTGAGAAGCTTGCAATTGCTTACGGATTGGCGAATTCTCCGG AAGGTACGAGTCTTCGTATCGTTAAGAATTTGAGAGTGTGCAAAGATTGCCACTCATTTACAAAGTTTGTGTCCAAGGCATTCGATAGAAGTATAATCGT GAGAGATCGAGTCCGGTTCCATCACTTCAAGGACGGAGTTTGTTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10041326 pacid=23179821 polypeptide=Lus10041326 locus=Lus10041326.g ID=Lus10041326.BGIv1.0 annot-version=v1.0 MFDTAKANAILKLLQGCNNFTRFRKIHAHVIVNGLDCDPAISTQLITFCAISVSGSLPYAQHLFDKMPDPPTQAWNSIIRGFSQSPSPLLALSYYNRLLQ LSHSPLSRCRDTYTFTFALKACERLHAHPKCREIHGSILRSGYHTDTVVCTGLLRCYSRNGAVEDARCVFDEMSDRDLVAWNAMISCYSQTGHHEQVMSM YGIMRDENVALDGFSLVGLLSSCAHVGALGLGIQLHRIASDKGLFGNLFVGNALIDMYAKCGSLDDALSVFYKMRRKDVFTWNSMIHGFGIHGLGNDAIS FFRKMLVDGIWPNSITFLGLLCGCSHQGLVEQGVDYFHLMSSKFNLKPGIKHYGCLVDLYGRAGKLDKALETIETSISDQFRDDPVLWRILLGSSKIHKN VACGEKAMRNLIRLNAVTAGDCVLLSTIYAGANYAPGVAKMRKSIKTLGVKTIPGWSWIEVSNRVHKFVVDDKLHPEITEVYQKLKEVTNRAASVGYVKD EDVILNLPGGCSETLSSCHSEKLAIAYGLANSPEGTSLRIVKNLRVCKDCHSFTKFVSKAFDRSIIVRDRVRFHHFKDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	0	1
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	3.2	0.9143
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	6.5	0.9084
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	7.0	0.8931
AT2G44640			unknown protein		Lus10019499 [exp]	7.1	0.8972
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	9.9	0.9063
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	11.3	0.8674
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	11.8	0.8792
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	16.1	0.8939
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	16.7	0.9048
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	17.2	0.8259

Compare expression of checked genes

Lus10041326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.