Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56550 406 / 2e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 290 / 2e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 279 / 3e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G50990 278 / 3e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 278 / 8e-89 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47530 277 / 8e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 277 / 2e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 276 / 7e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 278 / 8e-87 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 276 / 1e-86 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041326 [exp] 651 / 0 AT3G56550 702 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037387 [exp] 626 / 0 AT3G56550 700 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000274 [exp] 279 / 5e-92 AT3G47530 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 283 / 6e-91 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032531 [exp] 277 / 7e-90 AT5G50990 625 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 279 / 4e-89 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 281 / 5e-89 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 283 / 3e-88 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 266 / 4e-88 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029500 [exp] 457 / 3e-159 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 300 / 2e-97 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 295 / 7e-96 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 294 / 1e-94 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G074500 [exp] 288 / 1e-92 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 291 / 2e-92 AT3G22690 582 / 0.0 unknown protein Potri.001G322100 [exp] 288 / 3e-92 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 280 / 2e-91 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G040100 [exp] 286 / 9e-91 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G199800 [exp] 279 / 6e-90 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041327 pacid=23179636 polypeptide=Lus10041327 locus=Lus10041327.g ID=Lus10041327.BGIv1.0 annot-version=v1.0 ATGAGAAGGAAAGACGTTTTCACCTGGAACTCGATGATTCATGGCTTCGGCATCCATGGACTTGGAAATGATGCTATATCTTTCTTTCGGAAGATGTTGG TGGATGGAATCTGGCCAAATTCCATCACTTTTCTGGGTTTGTTATGCGGCTGTAGCCACCAAGGGTTAGTAGAGCAAGGTGTGGATTACTTCCACCTAAT GAGCTCCAAGTTCAATCTGAAACCTGGTATCAAACACTACGGTTGCTTGGTGGATCTGTATGGACGAGCCGGTAAGCTTGATAAAGCTCTTGAGACCATA GAAACTTCCATCAGTGATCAGTTTCGAGATGATCCGGTCTTGTGGCGAATCCTGCTAGGCTCTAGTAAGATCCATAAGAACGTGGCCTGTGGAGAGAAAG CAATGAGGAATCTGATCAGACTCAACGCAGTAACTGCAGGGGATTGCGTGCTGCTTTCGACTATTTATGCCGGAGCAAACTACGCCCCGGGGGTCGCGAA AATGAGGAAATCAATCAAGACACTCGGCGTTAAGACCATCCCTGGTTGGAGCTGGATTGAGGTCTCGAACCGAGTTCACGAGTTTGTCGTTGACGACAAG TTGCATCCTGAGATCACAGAGGTGTACCAGAAACTCAAGGAGGTAACGAACCGAGCGGCTTCAGTCGGGTATGTGAAGGACGAGGATGTAATACTGAACC TGCCTGGAGGGTGTTCGGAGACTTTGAGTTCATGTCACAGTGAGAAGCTTGCAATTGCTTACGGATTGGCGAATTCTCCGGAAGGTACGAGTCTTCGTAT CGTTAAGAATTTGAGAGTGTGCAAAGATTGCCACTCATTTACAAAGTTTGTGTCCAAGGCATTCGATAGAAGTATAATCGTGAGAGATCGAGTCCGGTTC CATCACTTCAAGGACGGAGTTTGTTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10041327 pacid=23179636 polypeptide=Lus10041327 locus=Lus10041327.g ID=Lus10041327.BGIv1.0 annot-version=v1.0 MRRKDVFTWNSMIHGFGIHGLGNDAISFFRKMLVDGIWPNSITFLGLLCGCSHQGLVEQGVDYFHLMSSKFNLKPGIKHYGCLVDLYGRAGKLDKALETI ETSISDQFRDDPVLWRILLGSSKIHKNVACGEKAMRNLIRLNAVTAGDCVLLSTIYAGANYAPGVAKMRKSIKTLGVKTIPGWSWIEVSNRVHEFVVDDK LHPEITEVYQKLKEVTNRAASVGYVKDEDVILNLPGGCSETLSSCHSEKLAIAYGLANSPEGTSLRIVKNLRVCKDCHSFTKFVSKAFDRSIIVRDRVRF HHFKDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	0	1
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	7.1	0.8321
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	11.0	0.8037
AT1G14810			semialdehyde dehydrogenase fam...		Lus10013239 [exp]	14.8	0.7826
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	14.8	0.8251
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	17.2	0.8259
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	21.8	0.7771
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	22.5	0.8121
AT3G57490			Ribosomal protein S5 family pr...		Lus10030129 [exp]	23.3	0.7860
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	27.1	0.7821
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015020 [exp]	29.8	0.7950

Compare expression of checked genes

Lus10041327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.