Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27010 88 / 2e-20 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT5G41030 86 / 4e-20 TCP TCP6 TCP family transcription factor (.1) AT1G58100 87 / 5e-20 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT3G47620 87 / 8e-20 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT1G72010 86 / 1e-19 TCP TCP22 TCP family transcription factor (.1) AT1G69690 85 / 2e-19 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT5G23280 84 / 2e-19 TCP TCP7 TCP family transcription factor (.1) AT5G08330 84 / 2e-19 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT2G45680 84 / 7e-19 TCP TCP9 TCP family transcription factor (.1) AT1G35560 81 / 7e-18 TCP TCP23 TCP family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037046 [exp] 93 / 2e-24 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 94 / 2e-23 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10032022 [exp] 89 / 1e-20 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10010177 [exp] 83 / 1e-18 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10037190 [exp] 83 / 2e-18 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10013814 [exp] 79 / 5e-18 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008621 [exp] 61 / 4e-11 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10035193 [exp] 60 / 8e-11 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008444 [exp] 38 / 0.0009 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060000 [exp] 89 / 5e-21 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.013G110700 [exp] 90 / 7e-21 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.017G068748 [exp] 89 / 7e-21 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G327100 [exp] 89 / 8e-21 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.003G120201 [exp] 83 / 2e-20 AT2G45680 131 / 3e-38 TCP family transcription factor (.1) Potri.011G055500 [exp] 88 / 3e-20 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.003G167900 [exp] 87 / 3e-20 AT3G27010 212 / 3e-67 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.016G094800 [exp] 85 / 3e-20 AT2G37000 104 / 5e-28 TCP family transcription factor (.1) Potri.004G046300 [exp] 87 / 4e-20 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.014G078500 [exp] 86 / 1e-19 AT2G45680 257 / 1e-83 TCP family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10041328 pacid=23179705 polypeptide=Lus10041328 locus=Lus10041328.g ID=Lus10041328.BGIv1.0 annot-version=v1.0 ATGGATGTTTTGAAAAAGAGTTTGCGAAGGGTCAAAAAAAAAAAAACCCTTAAAATTTTCACACACACTGCGCCGCCCCCCCCCCAGCCGCTCCTCCCCG TCTCGAGCAACAAGTCCAGCAACCGCGATCGCCACAGGAAGGTTGATGGCCGGGGCACCAGGGTCCGGCTCCCCGCCCTCTGCGCCGCCCGTATCTTCCA GTTAACCCGAGAGCTCGGCCACCGCACCGACGGCCAGACCGTCGAGTGGCTCCTTAATCATGTCCCTCATTCCCATTTCCCTTCCGATCAAACCTCCTCC CCTTCGCTGGTCGCCAACAGCGTCTTGTCTTCCTCTTCCAGGACAGAGATGAGACCCAGGAAAAGGGCCATTCCTGAGCCTGATTCCGGATCTTCCTCTT CTTCTCCTGCTCCACCTCATACTAATATCCCGCCTGAATCGAGCTCCACCACAATAATGCCGCCGATTGCAACTCCGCCAGCTTCAACAGCTCCTCTTCC ACCACCGCCGCCGATGATCACGCCAATGACGGCCCTGGAGAGGAGGAGGATGAAGGAAGAGCCCAAGGCTGCTGGGCCGTCGAGTGATTTTGAGCTATTC CGAGGGCCGGACGTTGGATTGGGAAACTTGTCATTTACATCATTGTTGATGCAGTGGGATAAGGACTAG
AA sequence Show only first row Show all	>Lus10041328 pacid=23179705 polypeptide=Lus10041328 locus=Lus10041328.g ID=Lus10041328.BGIv1.0 annot-version=v1.0 MDVLKKSLRRVKKKKTLKIFTHTAPPPPQPLLPVSSNKSSNRDRHRKVDGRGTRVRLPALCAARIFQLTRELGHRTDGQTVEWLLNHVPHSHFPSDQTSS PSLVANSVLSSSSRTEMRPRKRAIPEPDSGSSSSSPAPPHTNIPPESSSTTIMPPIATPPASTAPLPPPPPMITPMTALERRRMKEEPKAAGPSSDFELF RGPDVGLGNLSFTSLLMQWDKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	0	1
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	1.4	0.8765
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	2.4	0.8181
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	3.9	0.8303
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	4.0	0.8208
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	4.5	0.8200
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	9.4	0.8111
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	11.2	0.7933
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	12.4	0.8020
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10020801 [exp]	20.5	0.8614
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	21.8	0.7967

Compare expression of checked genes

Lus10041328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.