Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28000 822 / 0 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT5G18820 562 / 0 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 466 / 8e-159 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G55490 463 / 9e-158 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT3G13470 456 / 6e-155 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G26230 405 / 6e-135 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G33210 392 / 2e-130 HSP60-2 heat shock protein 60-2 (.1.2) AT3G23990 387 / 1e-128 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT3G13860 358 / 5e-117 HSP60-3A heat shock protein 60-3A (.1) AT3G11830 54 / 2e-07 TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037386 [exp] 958 / 0 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10038352 [exp] 564 / 0 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10036216 [exp] 557 / 0 AT5G18820 771 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10013404 [exp] 458 / 8e-156 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 459 / 2e-155 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10011902 [exp] 397 / 3e-132 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 397 / 4e-132 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 395 / 1e-131 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 390 / 2e-128 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009300 [exp] 886 / 0 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 882 / 0 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.015G122800 [exp] 603 / 0 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 463 / 9e-158 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 463 / 2e-157 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.015G123600 [exp] 440 / 2e-151 AT5G18820 641 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.015G123200 [exp] 426 / 1e-146 AT5G18820 552 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 422 / 7e-142 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.003G173900 [exp] 406 / 1e-135 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 404 / 7e-135 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10041329 pacid=23180021 polypeptide=Lus10041329 locus=Lus10041329.g ID=Lus10041329.BGIv1.0 annot-version=v1.0 ATGGCGACATCTAATGCTCTCTCCACTGCCTCCATTTTCAGCTCTCCTTCCCAGGCGTCCCTTAGGAGGAACCAGCGCCAGAATCAGAGACTCAACTTTG GGAACTCCACCAGGAGGTTCTCTGTGAAAGCCAGTGCTAAAGATATTGCCTTTGACCAACACTCGCGGAAGGCTCTTCAGGCTGGCATCGATAAGCTTGC CGACGCTGTTGGCCTCACTCTCGGACCCAGGGGGAGGAATGTTGTTCTTGACGAATATGGCAGCCCCAAGGTGGTTAACGATGGTGTGACAATTGCACGA GCTATTGATTTGCCTGATCCGATGGAGAATGCTGGAGCAGCTCTCATTAGAGAGGTTGCTAGCAAAACTAATGACTCGGCTGGTGATGGAACGACTACCG CATCAGTCCTCGCTAGGGAAATTATTAAACTTGGGCTATTGTCGGTTACTTCTGGTGCAAATCCAGTCTCAATTAAGAGGGGAATTGACAAGACTGTGCA GGGTTTGATTTACGAGCTAGAACAGAAGTCTAGGCCTGTGAAGGGTCGCGATGACATCAAAGGTATCATTAGCTTGTTTCTCCTGTTTTTTCTGCCTATT GACAGAGGCTACATCTCCCCTCAGTTTGTGACAAACCTAGAGAAGTTGATTTGTGAATTTGAGAACGCAAGGGTTTTGGTCACTGACCAAAAGATTTCAG CAATCAAGGACATAATTCCTTTACTCGAGAAGACGACCCAACTCAGAGCTCCTTTGCTCATCATTGCTGAGGATGTTTCTGGGGAGGCCTTGGCAACCTT GGTTGTTAACAAGCTCAGAGGTATCCTTAACGTTGCTGCCATCAAAGCACCAGGTTTTGGTGAGAGGAGGAAGGCCATGCTTCAAGATATTGCCATCTTG ACAGGGGCTGAGTTCCAAGCTAGTGATCTTGGATTACTGGTAGAGAACACAACTGTCGAGCAGCTGGGTTTGGCAAGGAAGGTGACCATCAGCAAGGACT CTACAACCATAATTGCTGATGCAGCATCGAAGGATGAGCTACAGTCTAGAGTTGCACAGTTGAAGAAGGAATTGTCCGAAACCGATTCTGTCTATGACTC GGAAAAACTGGCCGAGCGAATAGCCAAATTGTCCGGTGGTGTTGCTGTCATCAAAGTGGGAGCTGCAACCGAGACTGAACTCGAGGACCGAAAGCTTCGC ATTGAAGATGCAAAGAACGCAACTTTTGCTGCCATAGAGGAAGGAATCGTTCCTGGGGGTGGAGCTGCACTGGTTCATCTATCAACCCTTGTTCCGGCCA TCAAGGAGAAGATTGAAGATGCCGATGAGCGGCTAGGTGCTGATATCGTACAGAAGGCTTTGGTAGCTCCAGCATCATTGATAGCTCAGAACGCAGGAGT GGAAGGCGAAGTGGTGGTGGAGAAGGTAATGAACAGCGAATGGGAGATTGGCTACAATGCAATGACAGACACTTATGAGAACCTGGTAGAGGCTGGAGTG ATTGACCCGGCAAAGGTGACGAGATGTGCTCTGCAGAATTCGGCATCGGTTGCAGGAATGGTGTTGACAACCCAGGCCATTGTCGTCGAGAAGCCGAAGC CCAAAGCACCAGCTGCTGCTGCTCCACAGGGGATGACCGTTTAA
AA sequence Show only first row Show all	>Lus10041329 pacid=23180021 polypeptide=Lus10041329 locus=Lus10041329.g ID=Lus10041329.BGIv1.0 annot-version=v1.0 MATSNALSTASIFSSPSQASLRRNQRQNQRLNFGNSTRRFSVKASAKDIAFDQHSRKALQAGIDKLADAVGLTLGPRGRNVVLDEYGSPKVVNDGVTIAR AIDLPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIYELEQKSRPVKGRDDIKGIISLFLLFFLPI DRGYISPQFVTNLEKLICEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVSGEALATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAIL TGAEFQASDLGLLVENTTVEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLR IEDAKNATFAAIEEGIVPGGGAALVHLSTLVPAIKEKIEDADERLGADIVQKALVAPASLIAQNAGVEGEVVVEKVMNSEWEIGYNAMTDTYENLVEAGV IDPAKVTRCALQNSASVAGMVLTTQAIVVEKPKPKAPAAAAPQGMTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	0	1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	1.4	0.9505
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10036843 [exp]	2.0	0.9457
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	2.4	0.9260
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	2.8	0.8733
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	2.8	0.9250
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	3.2	0.9227
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	4.9	0.8988
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	6.3	0.8676
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	8.4	0.8839
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	11.7	0.8474

Compare expression of checked genes

Lus10041329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.