Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041330 pacid=23179757 polypeptide=Lus10041330 locus=Lus10041330.g ID=Lus10041330.BGIv1.0 annot-version=v1.0 ATGGGTGCATGGTGGTGGCCACAGTATAATTTGGCTTGGCATCGATCTCCAGGTAGGTTGGCTCTCTCATCTCAGCAGTCGTCGTCTGGCTCAGTCTGTG CCCTCCCTCTGAACATCACTGCATGCGGCTGGCTCTTATTCCGGTCCACTGCCCTATTTGTCCCGCCTTGTTTTCCAATAATGGCAATTTGTGGTGATGA AGAGCAGGCAAGTGGTTGGAATTGCGACCGCATCCCTCCCGGCGCTGACTTCTGGCTTGATTTGTGA
AA sequence Show only first row Show all	>Lus10041330 pacid=23179757 polypeptide=Lus10041330 locus=Lus10041330.g ID=Lus10041330.BGIv1.0 annot-version=v1.0 MGAWWWPQYNLAWHRSPGRLALSSQQSSSGSVCALPLNITACGWLLFRSTALFVPPCFPIMAICGDEEQASGWNCDRIPPGADFWLDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041330 [exp]	0	1
					Lus10028091 [exp]	6.3	0.6764
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Lus10036960 [exp]	6.8	0.7259
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	7.5	0.7132
					Lus10038720 [exp]	14.1	0.6870
					Lus10022109 [exp]	14.9	0.6757
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10035092 [exp]	15.9	0.6457
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	18.3	0.6147
					Lus10030775 [exp]	21.6	0.6900
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	24.8	0.6749
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Lus10037107 [exp]	25.5	0.6107

Compare expression of checked genes

Lus10041330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.