Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28070 891 / 0 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT1G17840 320 / 6e-100 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 300 / 2e-92 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 283 / 4e-86 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 247 / 1e-72 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G71960 128 / 7e-31 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT5G06530 126 / 4e-30 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 126 / 5e-30 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT2G01320 120 / 2e-28 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT1G31770 117 / 2e-27 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037384 [exp] 1100 / 0 AT2G28070 1084 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10021440 [exp] 883 / 0 AT2G28070 1068 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10016125 [exp] 844 / 0 AT2G28070 1035 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 315 / 4e-98 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 305 / 3e-94 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 289 / 2e-88 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 276 / 2e-83 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 268 / 3e-80 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 251 / 3e-74 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214000 [exp] 962 / 0 AT2G28070 1069 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.009G008200 [exp] 939 / 0 AT2G28070 1018 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.001G312300 [exp] 329 / 2e-103 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 328 / 4e-103 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 324 / 3e-101 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 323 / 3e-101 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 321 / 3e-100 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 321 / 5e-100 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 309 / 3e-96 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 306 / 9e-95 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10041333 pacid=23179800 polypeptide=Lus10041333 locus=Lus10041333.g ID=Lus10041333.BGIv1.0 annot-version=v1.0 ATGGAGGAAATACAGTCTCAATCAGACAACTACAGGTCTTCATCATCATCTGCTAGCAGTCCTGCTAGTAGGGTGCCTTCAAGTAACTTCTTCTACATGA GGAAGCCTGGTGCTCTCAGACAGCCCATTTCTTTCGAGGATTCGCCGGAGTGGGAGGATACGGATGGGGATGCTAGTAGGATGGAGGAAGGAGGAGGAGG GGACCATGACTCTATAAATATCGCAATGACTCCGGCTTCCCCATCTCTTTCGAAGCTGAATAGTGGCTCATTGCCATCTCCACCTATACCCGAGAGTGTT ACTGCTGTGAGAAAGATTACAGGGGCTTGTGTTGTGTGGAGAGACTTGACTGTCACAATCAAGGGGAAGAGGAAGTATTCTGATAAGGTTGTCAAGAGCT CGAGAGGGTATGCATTGCCTGGGACAATGACGGTTATCATGGGGCCTGCAAGATCTGGAAAATCCACGTTACTAAGGGCCATTGCAGGAAGATTGCATCA GTCGGATAAAATGTACGGTGAAGTCTTTATAAATGGCTCAAAATCTCCCATGCCTTACGGCTCATACGGTTTTGTCGAGAGAGAAACTACACTTATTGGC TCCCTTACTGTCCGGGAGTACCTGTACTATGCTGCATTGCTTCAACTGCCTGGTTTTTTCTGCCAGAAGAAGAGTGTGGTTGAGGATGCCATCCATGCCA TGTCACTGACTGACTATGCAAACAAGTTGATTGGAGGTCACTGTTATATGAAAGGCCTTTCTAGGGGTGAGAGGAGACGTGTAAGTATTGCTAGAGAGCT AGTGATGAGGCCACATGTCTTGTTCATAGATGAGCCCCTCTATCATCTTGACAGCACGGAAGTGTTTGGTCTCTTTGATCGGATCTGCCTGCTTTCAAAT GGAAATATGTTATTCTTCGGAGAAACACTAGCATGCTTGCAGCACTTCTCGAATGCGGGATTTCCATGCCCTATTATGCAAAGCCCATCTGATCACTTCT TGCGTGCAATAAATACTGAATTCGACAGGATCATTGCTATGTGCAAAAACTGGCAGGATGACAATGGAGATTTTTCTTCAGTGAATATGGATACCGCCGT TGCAATACGTACACTGGAAGCAACCTATAAACAGTCAGCAGATTCTGCTGCTGTTGAAACCATGATTTTCAAACTCACGGAAAGGGAAGGTCCGCTGCTT AAAACCAAGGGAAGAGCTGGGTTTGGGACGAGAATCGCGGTGTTGACTTGGAGATCATTGCTCATTATGTCAAGAGAATGGAAATACTACTGGCTCCGCC TCATCCTCTATATGGCTCTTGCACTATGTATTGGCACTGTATTTTCCGGGCTTGGACATTCCCTTTCCTCAGTTGTGACAAGAGTTGCTGCTGTTTTTGT TTTTGTGTCATTTACTTCACTTCTAAGCATTGCTGGAGTGCCTGCACTTCTTAAAGAAATCAAGATATATGCAGGTGAAGAATCAAATATGCATTCCGGA GCACTAGTCTTCTTACTCGGACAGTTCCTCTCCAGCATACCTTTCCTGTTTCTCATCTCCATCTCATCAAGCCTCGTCTTCTACTTCCTAATCGGCTTAA CAGATGAATTCAGCTTGTTAATGTACTTCGTCCTCAACTTCTTCATGTGTCTCCTAGTGAATGAAGGACTCATGCTCCTTGTCGTTTCGCTCTGGCGACA TCTGTTTTGGAGTGTCCTGACATTGGTATCCATCCATGCGGTCATGATGCTCTCTGCGGGCTACTTCAGGATCCGGAATGCATTGCCTGGACCTTTCTGG ACTTATCCCATCTCCTATGTTGCCTTCCATACTTACTGCATTCAGGCAAGTCAATATTACACACTATTTTTGTTAGAAATCGCAAGCAATGAATGA
AA sequence Show only first row Show all	>Lus10041333 pacid=23179800 polypeptide=Lus10041333 locus=Lus10041333.g ID=Lus10041333.BGIv1.0 annot-version=v1.0 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYMRKPGALRQPISFEDSPEWEDTDGDASRMEEGGGGDHDSINIAMTPASPSLSKLNSGSLPSPPIPESV TAVRKITGACVVWRDLTVTIKGKRKYSDKVVKSSRGYALPGTMTVIMGPARSGKSTLLRAIAGRLHQSDKMYGEVFINGSKSPMPYGSYGFVERETTLIG SLTVREYLYYAALLQLPGFFCQKKSVVEDAIHAMSLTDYANKLIGGHCYMKGLSRGERRRVSIARELVMRPHVLFIDEPLYHLDSTEVFGLFDRICLLSN GNMLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTEFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKQSADSAAVETMIFKLTEREGPLL KTKGRAGFGTRIAVLTWRSLLIMSREWKYYWLRLILYMALALCIGTVFSGLGHSLSSVVTRVAAVFVFVSFTSLLSIAGVPALLKEIKIYAGEESNMHSG ALVFLLGQFLSSIPFLFLISISSSLVFYFLIGLTDEFSLLMYFVLNFFMCLLVNEGLMLLVVSLWRHLFWSVLTLVSIHAVMMLSAGYFRIRNALPGPFW TYPISYVAFHTYCIQASQYYTLFLLEIASNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041333 [exp]	0	1
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	3.2	0.8892
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	4.0	0.9062
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	10.2	0.8785
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	11.1	0.8804
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	12.5	0.8789
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10032563 [exp]	13.6	0.7836
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	15.0	0.8713
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	15.7	0.8791
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	19.4	0.8818
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	21.9	0.8470

Compare expression of checked genes

Lus10041333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.