Plant FIBer expression Database

Lus10041334 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28070 83 / 7e-20 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037384
[exp]
127 / 3e-35 AT2G28070 1084 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
Lus10021440
[exp]
103 / 6e-27 AT2G28070 1068 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
Lus10016125
[exp]
103 / 8e-27 AT2G28070 1035 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G008200
[exp]
105 / 1e-27 AT2G28070 1018 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
Potri.004G214000
[exp]
105 / 2e-27 AT2G28070 1069 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
PFAM info
Representative CDS sequence
>Lus10041334 pacid=23180025 polypeptide=Lus10041334 locus=Lus10041334.g ID=Lus10041334.BGIv1.0 annot-version=v1.0
ATGGATCGAAAGGGAGACAACACAAACGATTTTACGAGAAAAACCTCTGACGTACTTTTTGTTTTGCAGGGACTTCTGGAGAACGAGTACCTAGTGACCA
CGTTCGCGGTAGGTCAAGTAAGGAGCATATCCGGGTATCAGGCTCTTCAAAGCGCATATGATATATCGCTGGACAGCAGTGCCAAGTGGGAGAACTTGTT
GGTATTGCTGCTCATGGCAATTGCATACCGGGTGGTGGTGTTCTTTGTGCTTCATTTTGGTGTGGGGAAGAATGGGTCTTTACTCAAGCTTTGCAGGTCT
AAACGTGATCAGAGCAGCAGCATCGGTTCCAGATAA
AA sequence
>Lus10041334 pacid=23180025 polypeptide=Lus10041334 locus=Lus10041334.g ID=Lus10041334.BGIv1.0 annot-version=v1.0
MDRKGDNTNDFTRKTSDVLFVLQGLLENEYLVTTFAVGQVRSISGYQALQSAYDISLDSSAKWENLLVLLLMAIAYRVVVFFVLHFGVGKNGSLLKLCRS
KRDQSSSIGSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28070 ABCG3 ATP-binding cassette G3, ABC-2... Lus10041334
[exp]
0 1
AT2G47640 Small nuclear ribonucleoprotei... Lus10013840
[exp]
4.7 0.8139
AT2G47640 Small nuclear ribonucleoprotei... Lus10030367
[exp]
5.3 0.8362
AT5G19750 Peroxisomal membrane 22 kDa (M... Lus10012098
[exp]
10.2 0.7732
AT5G41050 Pollen Ole e 1 allergen and ex... Lus10041541
[exp]
11.0 0.7834
AT4G18100 Ribosomal protein L32e (.1) Lus10007541
[exp]
14.7 0.7812
AT1G04590 EMB2748 unknown protein Lus10015943
[exp]
15.2 0.7596
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Lus10042056
[exp]
17.7 0.7255
AT1G16570 UDP-Glycosyltransferase superf... Lus10031569
[exp]
17.7 0.7500
Lus10029394
[exp]
20.1 0.8078
AT5G17660 tRNA (guanine-N-7) methyltrans... Lus10015923
[exp]
20.3 0.7052

Lus10041334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.