Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45040 623 / 0 phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037383 [exp] 1022 / 0 AT3G45040 632 / 0.0 phosphatidate cytidylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007900 [exp] 660 / 0 AT3G45040 644 / 0.0 phosphatidate cytidylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10041335 pacid=23179699 polypeptide=Lus10041335 locus=Lus10041335.g ID=Lus10041335.BGIv1.0 annot-version=v1.0 ATGACAACCGTCACCACCCCGCTGCCGCTGATCACCGGCGAGCGGGCCGTGGTTGTGATGTTCATTGGCTGCCTGTTGTACTCCCTCCCTCACTCGCTTC TCTATCCCGGCATCTTTCTAGCTTTCCTTTCCCTATTTGCAGTCGTCGTCGAGATTCGCTCCGAGAGCTCTGGTTCCCTGTCTCATTTCCAAACCAGACC CGGTGCTTCATCAGGGATATTGCTTGGTGCAGTTACATTGCCTGCACTTATGTTATCAAAGCTGATACAGCTTTCTAGAGCATTGGATTTGCATGAGACT GAACTTCGAGAAGTTGATTATCGACAGACGCAATATTGGGCCACGTCTGTTAGCTGTCTCTGTGTGCTGATCTTTCTCTCCTTCACCGCAAGGGCTGCGT CAAAAAGTTCACACTCCTATCATAGAGGACTGGCTGCTAAATTTATCTTGGGATGCATTGTCTTGTGTGCAGCATTTTACAATATCTTCACTACCGCTGT AACCCATGTCTTTACTCTCTCTCTCTCTGATGGCTATGGTGTTATCCTCACAGGCATGCAAACAACGTCAAATTTGTTGTGGGTGCTATTTCATGGAGTT GCCACTGTGTATCTGATCCAGCATGTGCTGAAGACATTTCCATCATGCGCCTCTATGGGGGAGACACTTCTGGTGACTGTGGGACTTGTTCTTTACTTTG GCGATGTATTGGCATGCACCGTTGCAAAGGCTAGTCTTCTTGGATACTGGAGCTCTCCAGCGTTGGCCTTTGTGCAATATGGGATTAGAAGAAATGAGAT TAGTATTGTCATTCAGGGACTGCTTCTTGGTCTTCTTCTGTTTCCTGTTACTTTTAAATTTCTGCTTCATGCAATAGACTCCCTTCCAGGAATGTCAAGC TCTGGGACGATGACGCATAATGGGAGAAGATCTCTCATTTTCTTTGTTTCGTTAGGTTTTGTCATGATTATTATCATGCCATTATGGATGCAATTTGTTT GGGATTTTCAGACACACCCGTTCTTATGGGTGGTCACATTTGTTTTCTCTGAGCCAGCTAAAAGATTGTCTCTGTGTCTCTATTGGGTTGGGTTGATATA TGTCTCTGTGCGGCGATTCTACTTCATATCAAAGAATAGTAAGACTGAGAGGATTCTTCTCCGGAAGTACTACCATCTGATGGTTGTTTCTATGTTTGTC CCTGCCGCTATCTTCCAGCCAAAGTTTCTCGATCTAGCTTTCGGGGCAGCCTTGGCCATCTTTTTGACATTGGAGATTATTCGGGTCTGGAGAATTTGGC CACTGGGGCAGCTTGTTCACCAGTTTATGAATGCTTTCACCGACCATCGTGATTCTGATCTCCTCATTGTTAGCCATTTTTCACTGTTGTTGGGATGTGC TCTTCCAATTTGGTTATCATCTGGGTACAATGATCGAGCGCTTGCTCCCTTCGCTGGAATTTTAAGCCTGGGAATTGGAGATACAATGGCATCCATGGTT GGTCACAAGTATGGTGTCTTGAGGTGGAGCAAAACTGGAAAGAAAACAATTGAAGGGACAGCAGCTGGGATAACTTCGGTTTTGGCTGCATGCTCAGTGT TGCTACCAGTTCTAGCATCCGCTGGATTCATCTTTACTCAGCATTGGCTCTCTCTCCTTGTTGCGGTTACGCTGAGTGGATTACTGGAGGCCTACACAGC ACAACTTGACAATGCTTTCATACCACTGGTTTTCTACAGCCTTCTCTGCTTGTGA
AA sequence Show only first row Show all	>Lus10041335 pacid=23179699 polypeptide=Lus10041335 locus=Lus10041335.g ID=Lus10041335.BGIv1.0 annot-version=v1.0 MTTVTTPLPLITGERAVVVMFIGCLLYSLPHSLLYPGIFLAFLSLFAVVVEIRSESSGSLSHFQTRPGASSGILLGAVTLPALMLSKLIQLSRALDLHET ELREVDYRQTQYWATSVSCLCVLIFLSFTARAASKSSHSYHRGLAAKFILGCIVLCAAFYNIFTTAVTHVFTLSLSDGYGVILTGMQTTSNLLWVLFHGV ATVYLIQHVLKTFPSCASMGETLLVTVGLVLYFGDVLACTVAKASLLGYWSSPALAFVQYGIRRNEISIVIQGLLLGLLLFPVTFKFLLHAIDSLPGMSS SGTMTHNGRRSLIFFVSLGFVMIIIMPLWMQFVWDFQTHPFLWVVTFVFSEPAKRLSLCLYWVGLIYVSVRRFYFISKNSKTERILLRKYYHLMVVSMFV PAAIFQPKFLDLAFGAALAIFLTLEIIRVWRIWPLGQLVHQFMNAFTDHRDSDLLIVSHFSLLLGCALPIWLSSGYNDRALAPFAGILSLGIGDTMASMV GHKYGVLRWSKTGKKTIEGTAAGITSVLAACSVLLPVLASAGFIFTQHWLSLLVAVTLSGLLEAYTAQLDNAFIPLVFYSLLCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45040			phosphatidate cytidylyltransfe...		Lus10041335 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	11.4	0.9188
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	48.6	0.8407
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	48.9	0.8783
AT4G39720			VQ motif-containing protein (....		Lus10016814 [exp]	51.2	0.8823
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	54.1	0.8466
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	70.8	0.8447
AT3G52710			unknown protein		Lus10021354 [exp]	91.0	0.8721
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10010284 [exp]	99.4	0.8522
AT1G17860			Kunitz family trypsin and prot...		Lus10007889 [exp]	254.2	0.8393
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	262.5	0.8374

Compare expression of checked genes

Lus10041335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.