Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16300 1325 / 0 Vps51/Vps67 family (components of vesicular transport) protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037382 [exp] 1395 / 0 AT5G16300 868 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177200 [exp] 1480 / 0 AT5G16300 1486 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein Potri.008G079700 [exp] 1466 / 0 AT5G16300 1360 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10041337 pacid=23179861 polypeptide=Lus10041337 locus=Lus10041337.g ID=Lus10041337.BGIv1.0 annot-version=v1.0 ATGAGGCAATCGTCGGCATCCACCCACCGCCCCGTCTCATCCACCGACCGCCAGGTCTCCGCTCCGGGCGTCGGCCACCGAGATGCCGAATCTCTCTTCC GATCTAAGCCCATTTCGGAAATCCGCAATGTGGAGTCCTCCACTAGGAAGCAGATCCAGGACAAGAAGGAAGAGCTCCGCCTCTTGGTCGGCAACCGTTA CCGTGACCTCATCGACTCTGCCGACTCCATCGTTCTCATGAAGTCCTCCTGCCACTCCATCTCCTCCAACATCTCTTCCATCCACTCCAATCTCCGCTCT CTTTCCCCTTCCTCCTCTCAATCCCAAACCCCTAATTCCGCAAACCCCAGCCCTGCTCGCTTCCACATCTACGGAATCGCCTGCCGCGTTAAGTATCTCG TCGACACTCCCGAGAACATCTGGGGATGCCTCGACGAGTCTATGTTCCTCGAGGCCGCCGCGAGGTACATCAGGGCTAAGCATGTCCATTTCCAGCTCCT CGATGGCGCTTCGGAAGGGGATCACAACAAGATCCTCTCTAATTTCCCTCTTCTGCAGCACCAGTGGCAGATCGTTGAGAGCTTTAAGTCTCAGATTTCG CAGCGGAGTCGGGAGAGGCTTCTGGATCAAGGGCTTTCCATTGGAGCTTATGCTGATGGTTTGGCTGCTGTTGCTGTCATCGACGAATTGGATCCTCAAA AGGTACTTGCTCTGTTTCTCGACACCAGGAAGTCATGGGTATCCCAGAAGTTAGCTGTTTTTGGAGGGAATGCTACCAGTGAGAACAATGCTTGTGAGAT TGTTGTGTCTGTGTTTTGTGAAGTGTTGAAGATTATGCAGATCACTGTAGGACAAGTAGGGGAGATGTTTCTGCAGGTTTTGAATGATATGCCTATGTTT TACAAAGTCATTCTTGGATCTCCTCCCGCCTCTCAGTTATTTGGTGGTATTCCATGTCCCGATTCCGAGGTGAGACTTTGGAAATTGTTTAGGGAAAAGC TAGAGTCCACAATGGTCACACTTGACAAGCATTACATCGCAAGTACATGTATGACTTGGTTGAGGCAATGTGGAAGAGACGCTGTGAGCGACATCAGTGG AAGATGCTTGATTGACACCGTTACTTCTGGCGGAGAGCTTGTTTTAGCCGAGAAGCTAATTAGAGAAACTATGGATAGCAAGCAAGTGTTAGCAGGAAGT TTGGAGTGGCTGAAAAGCGTATTCGGATCTGAAATTGAGTTGCCTTGGAGTAGGATCCGGGAGCTAGTTCTGGAAGATGACTCTGATCTCTGGGATGAGG TATTTGAAGATGCTTTTGTTCAGAGGATGAAAGTCGTCATCGACTCTGGATTTAAGGATCTGGTAAGAGATATCAATTTTGAGAGCTCTGTGGCCGCTGT TGGAGGAGATCCTGCTGAGTGTATTGATTTCCAAGCATACTTAAACAGACCCTCCACCGGTGGTGGAGTCTGGTTTATTGAACCTAATATGAAGAAGCCT GGTGTGACTTTAGGTTATAAAGCATCACTTGAAGGGAACGACTTTTGGAGTTGTCTCAGTGCGTATTTCGGTCCTGAGGTTGGTCGTATCAGAGATGCAG TTGATAAACGTTGTCAAGTTGTACTTGAGGATGTTTTGAGTTTCTTAGAATCCCCCAATGCAGCTCCTAGACTAAAGGAGTTGGTTCCTTTTCTACAAGA TAAGTGCTACGCCTGCATGTCTTCTATTCTGACAGAAATTAAGACTGAGCTTGACCGTCTATATTCTTCCATGGGAAAAGCTGATGGGGCGGTTCAGGAA ATGCCTCCTGCTGTAGTGGTCGAGAGATCTATATTCGTTGGAAGACTTCTATTTGCAATCCAGAACCACTCAAAGCATGTCCCACTGATTCTGGGACCTC CTAGGTGCTGGGTGAAAGGTCAAACGGCTCCAGGCTATGAGAAACCAGCATCTGGTTTGAAGCAATACAGGATTACTGCTGATTCTCTTGATAGTCCTGG ACAGCAGTTGCACACTGGATCTAGAAAACAGAACTCTTCTGGGACTGCTGCTCTAATCGGAAACAGTGAGATTGGGAGTCACAAACTTGAAGAGCTGATC GAAATGATCAGAGATCTTTGCATTAAAGCTTATGGCTTGTGGATATCCTGGCTGTCTGATGAGCTTTCTTCAATTCTTGCCTATGATCTCGCGAACGATG ATGGATTATCAACAACAACTGCATTGAAGGGTTGGGATGAGACAGTAGTTAGGCAAGAGACTTCTGATGATAGTCCATCGGAAATGAAGATTTCACTCCC TTCCATGCCTTCACTGTATGTTATCTCATTTCTGTTTCGCGCATGTGAAGAGGTTCACAGAATTGGAGGTCATGTACTTGACAAAGCAATCCTACAAAAG TTTGCCTCAAGGTTATTGGAAAAGGTTTCTGAAATTTACGAGGCCTTCTTTTCTTCAAGGGAGTCTCAAGGATCACCAGTATCAGAGAAAGGAGTACTAC AGATTCTGTTGGATCTCAGATTTGCAGCTGATGTACTCTCGGGAGCTGATTCCAGCAGTGTTCAGGAGTCATCTAGAAATCCTAAAGTGAAAGTTCCTTT GAGAATGAGGAAAGATACAAGCCAGAGAAAGGCAGTCTTTAGAGAACGAATTAACGTGCTAATTCGATCTTATTCACAAAGATTGGATCCAATTGACTGG CAAACGTATGAGGCATACCTTTGGGAGAATGCAAGACAATCATATCTGCGACATGCTGTTCTTTTTGGATTCTTTGTGCAATTAAATCGCATGTACACAG ATACAGTGCACAAGCTGCCGACTAATCCCGAATCAAATATCATGCGATGCTCTACTGTTCCACGCTTCAAATACCTTCCAATAAGTGCACCAGCATTGTC TTCCCGAGGGACAGCAAAGTCATCCTTCCGAGCATCCATGGATGATGTATCTTCGAGAAATATGTGGAAAGCTTATGCCAACAGCGAACATCCTTCAAAG ATCGATTTTGATGACAACTCGAGTTTTGGCGTAGCAACACCAATTTTCAAGTCTTTCATGCAGGTAGGGAGTAGGTTTGGGGAAAGCACCATGAAGTTGG GTTCCATGCTGACAGACGGACAGGTCGGTATATTCAAAGATAGATCCGCAGCTGCCATGTCAACATTCGGCGACATATTACCTGCACAGGCTGCTGGTCT TCTCTCATCATTTACTGCTACCAGGTCTGATTGA
AA sequence Show only first row Show all	>Lus10041337 pacid=23179861 polypeptide=Lus10041337 locus=Lus10041337.g ID=Lus10041337.BGIv1.0 annot-version=v1.0 MRQSSASTHRPVSSTDRQVSAPGVGHRDAESLFRSKPISEIRNVESSTRKQIQDKKEELRLLVGNRYRDLIDSADSIVLMKSSCHSISSNISSIHSNLRS LSPSSSQSQTPNSANPSPARFHIYGIACRVKYLVDTPENIWGCLDESMFLEAAARYIRAKHVHFQLLDGASEGDHNKILSNFPLLQHQWQIVESFKSQIS QRSRERLLDQGLSIGAYADGLAAVAVIDELDPQKVLALFLDTRKSWVSQKLAVFGGNATSENNACEIVVSVFCEVLKIMQITVGQVGEMFLQVLNDMPMF YKVILGSPPASQLFGGIPCPDSEVRLWKLFREKLESTMVTLDKHYIASTCMTWLRQCGRDAVSDISGRCLIDTVTSGGELVLAEKLIRETMDSKQVLAGS LEWLKSVFGSEIELPWSRIRELVLEDDSDLWDEVFEDAFVQRMKVVIDSGFKDLVRDINFESSVAAVGGDPAECIDFQAYLNRPSTGGGVWFIEPNMKKP GVTLGYKASLEGNDFWSCLSAYFGPEVGRIRDAVDKRCQVVLEDVLSFLESPNAAPRLKELVPFLQDKCYACMSSILTEIKTELDRLYSSMGKADGAVQE MPPAVVVERSIFVGRLLFAIQNHSKHVPLILGPPRCWVKGQTAPGYEKPASGLKQYRITADSLDSPGQQLHTGSRKQNSSGTAALIGNSEIGSHKLEELI EMIRDLCIKAYGLWISWLSDELSSILAYDLANDDGLSTTTALKGWDETVVRQETSDDSPSEMKISLPSMPSLYVISFLFRACEEVHRIGGHVLDKAILQK FASRLLEKVSEIYEAFFSSRESQGSPVSEKGVLQILLDLRFAADVLSGADSSSVQESSRNPKVKVPLRMRKDTSQRKAVFRERINVLIRSYSQRLDPIDW QTYEAYLWENARQSYLRHAVLFGFFVQLNRMYTDTVHKLPTNPESNIMRCSTVPRFKYLPISAPALSSRGTAKSSFRASMDDVSSRNMWKAYANSEHPSK IDFDDNSSFGVATPIFKSFMQVGSRFGESTMKLGSMLTDGQVGIFKDRSAAAMSTFGDILPAQAAGLLSSFTATRSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	1.4	0.9452
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	4.0	0.9376
AT4G21700			Protein of unknown function (D...		Lus10006025 [exp]	4.9	0.9211
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	5.5	0.9297
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	7.3	0.9145
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10029909 [exp]	8.8	0.8750
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	10.1	0.9052
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	10.4	0.9282
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	10.5	0.9247
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	11.8	0.9163

Compare expression of checked genes

Lus10041337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.