Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45010 650 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G10410 635 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G22980 630 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT1G15000 201 / 1e-58 SCPL50 serine carboxypeptidase-like 50 (.1) AT5G22960 186 / 5e-56 alpha/beta-Hydrolases superfamily protein (.1) AT3G25420 190 / 3e-54 SCPL21 serine carboxypeptidase-like 21 (.1) AT4G12910 190 / 4e-54 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G17180 187 / 2e-53 SCPL33 serine carboxypeptidase-like 33 (.1) AT1G28110 178 / 4e-50 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT1G61130 174 / 1e-48 SCPL32 serine carboxypeptidase-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041338 [exp] 734 / 0 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 728 / 0 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037958 [exp] 623 / 0 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10000147 [exp] 609 / 0 AT5G22980 380 / 3e-137 serine carboxypeptidase-like 47 (.1) Lus10038691 [exp] 603 / 0 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 587 / 0 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 318 / 8e-108 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10013395 [exp] 184 / 3e-52 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10041000 [exp] 183 / 6e-52 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G215400 [exp] 674 / 0 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.010G227700 [exp] 608 / 0 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.008G034800 [exp] 606 / 0 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.005G060100 [exp] 199 / 7e-58 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.012G105500 [exp] 188 / 8e-54 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.008G129800 [exp] 186 / 5e-53 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.006G036000 [exp] 186 / 1e-52 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 184 / 3e-52 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 183 / 7e-52 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 182 / 1e-51 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10041339 pacid=23180033 polypeptide=Lus10041339 locus=Lus10041339.g ID=Lus10041339.BGIv1.0 annot-version=v1.0 ATGAATTCAATTTACCAACATTACTACATCCTCTGTTTATCGCTTGCTCTGTTTCTCTTCTCTTCGTTCTCCTCTGCCCTCAGATACCCACCGTCTCCTT CTCAATTGGGATTGACTTCAACAACCGAAAAGATCTCACCAAAAGGCCAAGCAGAGAGGCTTATCCGCTCCTTCAATTTGTTCCCCAAACACGACGCCAA CATCGTCCTCAACGACCAGTCTGCCAAAGATGCTCCGGCAATCGTCGAGAGGCAATTCACTCTCAATGTCACTGCCGCCCCCGGCAGCACCCCTGGTCCT TCAATCCAGCAGTTCGTCCATTATGCCGGCTACTATTCTCTCCCCGACACCAAAGGTGCAAAGATGTTCTATTTCTTCTTTGAGTCAAGGCAGAACAAGA CCGATGCTCCGGTGGTGATATGGCTGACAGGAGGACCAGGATGCGCAAGTGAATTGGCTTTGTTCTATGAAAACGGTCCTTTCCAGATTACAGAGGATAT GTCCCTTGTTTGGAATGACTATGGTTGGGACCAGGCTTCAAACATATTGTACGTTGACCAGCCCACCGGAACAGGGTTCAGTTACACGACCGACGATAGC GACATCCGACACGACGAAGTCGGAGTTAGTAACGACATGTACAACTTCCTTCAGGAATTCTTCAAAGGTCACCCCAAATATCAAAGCAATGATTTCTTCA TAACTGGAGAATCGTACGCCGGACATTACATTCCGGCTCTGGCTTCCAGGATTTACAAGGGAAACACCAACAAGGAAGGCCTTCACGTTAACTTGAAGGG ATTTGCGATCGGAAACGGGCTCACTGATCCTGCTTTCCAATACAAAGCGTACCCGGATTACGCTCTCTCTGAGAAACTGATTTCCAAGTCTGACCACGAC TCCATCGTCAGCCAACTGGTTCCACCTTGCGAATCCGCCATTTCAGCTTGCGCTTCCCAAGGGCAAGACGCTTGCATTGACGCATACTCCACTTGCAACC AGATCTTCAATTCTATTCTAAACATTGCCGGCTCCATTAATTACTACGACATTCGAAAGCAATGCGAGGGCTCGCTGTGCTACGATTTCTCGAGGATGGA GACATTCCTCAGCGACGACAAGGTCAAATCGGCACTAGGGGTGAAAGACATCGACTTCGTTTCTTGCAGCACTCAGGTGTACGATGCGATGATGGGGGAC TGGATGCACGACTACGAAGTCGGGATCCCGGCTTTGCTCGAGAGTGGGATCAAGGTGTTGATATACGCAGGAGAGTATGATTTGATATGCAATTGGGTTG GGAACTCGAATTGGGTGAATGGGATGAAATGGTCGGGGCAGAAGCAGTTCCAGTCGGCTAAAACTGTTCCGTTTGTGGCCGGAAATGCTAAATCTGGAGA GCTGAAGAGCTATGGACCTCTGGCTTTCCTGAAGGTATACAATGCAGGGCATATGGTTCCGATGGATCAGCCCAAAGCAGCGTTGCAGATGCTGGAGAGC TGGATGCAAGGGAAGCTTAGTTTGATGACCACCGCATCAACTAAGCAAAAGATTTCTCTTGTCTAA
AA sequence Show only first row Show all	>Lus10041339 pacid=23180033 polypeptide=Lus10041339 locus=Lus10041339.g ID=Lus10041339.BGIv1.0 annot-version=v1.0 MNSIYQHYYILCLSLALFLFSSFSSALRYPPSPSQLGLTSTTEKISPKGQAERLIRSFNLFPKHDANIVLNDQSAKDAPAIVERQFTLNVTAAPGSTPGP SIQQFVHYAGYYSLPDTKGAKMFYFFFESRQNKTDAPVVIWLTGGPGCASELALFYENGPFQITEDMSLVWNDYGWDQASNILYVDQPTGTGFSYTTDDS DIRHDEVGVSNDMYNFLQEFFKGHPKYQSNDFFITGESYAGHYIPALASRIYKGNTNKEGLHVNLKGFAIGNGLTDPAFQYKAYPDYALSEKLISKSDHD SIVSQLVPPCESAISACASQGQDACIDAYSTCNQIFNSILNIAGSINYYDIRKQCEGSLCYDFSRMETFLSDDKVKSALGVKDIDFVSCSTQVYDAMMGD WMHDYEVGIPALLESGIKVLIYAGEYDLICNWVGNSNWVNGMKWSGQKQFQSAKTVPFVAGNAKSGELKSYGPLAFLKVYNAGHMVPMDQPKAALQMLES WMQGKLSLMTTASTKQKISLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	0	1
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	1.7	0.9932
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	2.4	0.9929
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	2.8	0.9912
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	3.0	0.9923
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	3.2	0.9905
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	5.2	0.9875
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	5.5	0.9902
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	6.3	0.9876
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	6.5	0.9878
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	7.4	0.9839

Compare expression of checked genes

Lus10041339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.