Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61830 370 / 3e-122 ARF ARF18 auxin response factor 18 (.1) AT2G46530 362 / 2e-119 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 349 / 7e-114 ARF ARF9 auxin response factor 9 (.1.2) AT1G59750 342 / 1e-110 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G62000 337 / 4e-107 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G35520 285 / 2e-89 ARF ARF15 auxin response factor 15 (.1) AT1G34410 284 / 6e-89 ARF ARF21 auxin response factor 21 (.1) AT1G35540 282 / 2e-88 ARF ARF14 auxin response factor 14 (.1) AT1G34310 279 / 2e-87 ARF ARF12 auxin response factor 12 (.1) AT1G34390 274 / 3e-85 ARF ARF22 auxin response factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030240 [exp] 521 / 0 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10023058 [exp] 382 / 4e-126 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10024455 [exp] 360 / 1e-117 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10007440 [exp] 358 / 9e-117 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032413 [exp] 328 / 1e-109 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10032541 [exp] 328 / 3e-103 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 325 / 2e-102 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10013942 [exp] 253 / 1e-76 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10005264 [exp] 252 / 4e-76 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100100 [exp] 391 / 2e-129 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 382 / 6e-126 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 373 / 2e-122 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.003G001000 [exp] 365 / 2e-119 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 364 / 3e-119 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.001G088600 [exp] 357 / 4e-116 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.003G163600 [exp] 328 / 3e-104 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 326 / 8e-103 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 321 / 3e-101 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 310 / 1e-96 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10041340 pacid=23179989 polypeptide=Lus10041340 locus=Lus10041340.g ID=Lus10041340.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCAATGTCCAACACTGTTCCCTCTGGTTCATCCTTTCCCAATGACCCAAAAGCAAACGATCCTCTGACTAAGGAGCTATGGAATATTTGCG CACATAGTACGGCCGGTGTTCCCAAAGAAGCACAATTAGTCTACTACTTTCTTCAGGGTCACATGGAACAATTACAAGAGACGATGAAGCTGGAACATGA TCAGCAAATCCCTCAGTTCGAAACCCCTTGCAAAATTCTCTGTCGAGTCATGAACGTTGAGAGAATGATTGAAGATGATACGGACGAGGTTTATGCTCAT ATCACCCTCCAGGCAACTGAGCAAATCGAGCTAACCGATCCGGTTTCTGACCCGCCCGAGAAGCCAAAGCCAACGGTTCACACATTCACCAAGATTCTGA CTGCTTCTGATATCGGCACCCATGGAAGCTTCTCATTGCATAGAAAACATGCTACGGATTGCTTACCACTCCTGGATTTGAATCAGGCCGCGCCGTCTCA GGAACTGGTTACCAAAGACTTCCACGGGCACGAATGGCGGTTTAAACATATTTTCAGGGGCGAACCTCGTAGGAATTTACTGACTAGAGGTTGGAACAAG TTTGTGAATTCGAAGAACCTGGTTGCTGGTGATGAGTTTGTGTTCATTAGAGGTGACAATGGTGAAATGAAGGTTGGTGTTCGTCGCATTTCCAGGAAGA AACCTTCCGCTCCGATTCTATCCGCACAGAGCTTGAGTTTAGCTGTTGTTGCTACTGGTCGTCATGCCATCTCCGAACTGAGCATCTTTTCGATCTACTA CAAGACTAGAGCAAGCCCATTTCTTATTGGGGTGACCAAGTATCAGGAAGCAATGAACTATGGGTTTCATGTAGGAATGCCCATCAAGACTAACAACGAT GGGGAACATTTGGGTTACATAGGCAAGATAGTTGAGGTAGGAGATTTCTCTCCGCAATGGCCAGGCTCCCAGTGGCGGTCACTGAAGGTGCAATGGTACG AACAGTCGAGAACTGAGAGGCTTCCTGACAGGGTTTCACCATGGGAGGTAGAGCCTTATGTGGCCTTTCCTTACCAAGGTGTTCCTCCTACAAGAAACAA AAGGACCAGATCACCCCCGGGTTCCGGTACGATCAACAAGTGTGGGTTTTTCGAATTAGTTACGTGTTGGATCGCGTTATCCGATTTTTATTTAAACCAA TTCAATGCAGATGTAGCTAGTTCCTCTGGTGTTGCTGAGGTACAGAATGGGAGTGAGTTGGGAGGAAGCATTCGGAAGCCGTCGTTGCCTCATCCGAACA CATCTTTTACAAACTTTCGGTTATTCGGTGTTGATCTTACTAGCAGCATTGGTAATGTCGCTGGTGCTCCCGCCACTCGGACTCGCACTGAGGTAAATAC GGAATATCCGTTGCCGGTTCAAAAACTATTGTTCATGCCTAGAGGATCCTTTCAATAA
AA sequence Show only first row Show all	>Lus10041340 pacid=23179989 polypeptide=Lus10041340 locus=Lus10041340.g ID=Lus10041340.BGIv1.0 annot-version=v1.0 MASAMSNTVPSGSSFPNDPKANDPLTKELWNICAHSTAGVPKEAQLVYYFLQGHMEQLQETMKLEHDQQIPQFETPCKILCRVMNVERMIEDDTDEVYAH ITLQATEQIELTDPVSDPPEKPKPTVHTFTKILTASDIGTHGSFSLHRKHATDCLPLLDLNQAAPSQELVTKDFHGHEWRFKHIFRGEPRRNLLTRGWNK FVNSKNLVAGDEFVFIRGDNGEMKVGVRRISRKKPSAPILSAQSLSLAVVATGRHAISELSIFSIYYKTRASPFLIGVTKYQEAMNYGFHVGMPIKTNND GEHLGYIGKIVEVGDFSPQWPGSQWRSLKVQWYEQSRTERLPDRVSPWEVEPYVAFPYQGVPPTRNKRTRSPPGSGTINKCGFFELVTCWIALSDFYLNQ FNADVASSSGVAEVQNGSELGGSIRKPSLPHPNTSFTNFRLFGVDLTSSIGNVAGAPATRTRTEVNTEYPLPVQKLLFMPRGSFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61830	ARF	ARF18	auxin response factor 18 (.1)		Lus10041340 [exp]	0	1
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	1.0	0.9066
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	22.3	0.8639
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10003309 [exp]	29.3	0.8616
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	33.6	0.8605
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030490 [exp]	45.4	0.8564
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003457 [exp]	63.7	0.8429
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	204.4	0.8260
AT3G19950			RING/U-box superfamily protein...		Lus10017722 [exp]	237.9	0.8015
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	245.5	0.8065
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	274.0	0.7755

Compare expression of checked genes

Lus10041340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.