Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 404 / 5e-143 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 402 / 3e-142 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G10550 212 / 5e-67 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G32170 209 / 1e-65 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT1G14720 206 / 1e-64 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT4G18990 204 / 2e-63 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT2G01850 201 / 2e-62 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT5G57560 196 / 2e-61 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G14130 196 / 3e-61 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 195 / 7e-61 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037377 [exp] 548 / 0 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 471 / 2e-169 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 468 / 5e-168 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 377 / 4e-132 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 375 / 3e-131 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 374 / 1e-130 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 372 / 4e-130 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 328 / 2e-112 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 251 / 1e-83 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006600 [exp] 419 / 8e-149 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.006G122900 [exp] 405 / 1e-143 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 400 / 3e-141 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G163850 [exp] 214 / 2e-68 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.010G102300 [exp] 204 / 7e-64 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.003G097300 [exp] 204 / 7e-64 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.008G138400 [exp] 204 / 8e-64 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.006G071200 [exp] 202 / 8e-64 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G152400 [exp] 201 / 3e-63 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.001G136100 [exp] 201 / 1e-62 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10041341 pacid=23180042 polypeptide=Lus10041341 locus=Lus10041341.g ID=Lus10041341.BGIv1.0 annot-version=v1.0 ATGGCTGCTCATGCTCTGTCTCAAACTCTGCTCTTCACGCTGCAACTCATTCTCGCCACTTTAGCTGTTAACAATGCTGCAGAGTACCCACCTTCCCCTG CCTACTTTCCAAGCTCCAGAGCTCCTTCTGTTGAGTTCAACCAAATGTTCAGAAACCGTTGGGGTCCTCACCACCAAAAACTTGACCAGCACACCCTCAC TATCTGGCTTGATCAATCCTCAGGAAGTGGATACCAGTCAATTCAGCCGTATAAATCGGGCTACTTCAGTGCTTCCATCAAGCTTCATCCCGGCTACACT GCCGGAGTCATTACATCTTTCTACCTGTCGAACAACGAGGTGCATCCCGGTAACCACGACGAGATTGACATCGAGTTCCTGGGAACCACACCGGGGAAGC CTTACACGTTGCAGACCAATGTGTATGTAAGGGGAAGTGGCGATGGGAACATCATAGGCAGAGAAATGCAGTTTCATCTCTGGTTTGACCCTACTCAAGA TTTCCACCATTATGCAATCCTTTGGGACCCCAATGAGATTATATTTTTTGTGGACGATGTGCCGATAAGGAGGTATCCAAGGAAAAGCGATGAGACATTC CCACAGAGGCCAATGTGGGTCTATGGCTCAATTTGGGATGCATCCGACTGGGCCACCGAGCATGGCAAGTACAAAGCTGACTATACCTACCAACCCTTTG TTGGAGAGTACCGGGGATTTAAGCTTGGTGGGTGCACGGCCGACCAGGGAACTGTCTGTCGGCCAACACCAGGGTCTCCAACAGGCTCGTCGGGACTGAG CGAACAGCAAGAAGGAGCCATGGGTTGGGTGCAGAGGAACAGCATGGTGTATGACTACTGTTCAGATCCACAGAGGGACCACACTCAGACGCCAGAGTGC TAG
AA sequence Show only first row Show all	>Lus10041341 pacid=23180042 polypeptide=Lus10041341 locus=Lus10041341.g ID=Lus10041341.BGIv1.0 annot-version=v1.0 MAAHALSQTLLFTLQLILATLAVNNAAEYPPSPAYFPSSRAPSVEFNQMFRNRWGPHHQKLDQHTLTIWLDQSSGSGYQSIQPYKSGYFSASIKLHPGYT AGVITSFYLSNNEVHPGNHDEIDIEFLGTTPGKPYTLQTNVYVRGSGDGNIIGREMQFHLWFDPTQDFHHYAILWDPNEIIFFVDDVPIRRYPRKSDETF PQRPMWVYGSIWDASDWATEHGKYKADYTYQPFVGEYRGFKLGGCTADQGTVCRPTPGSPTGSSGLSEQQEGAMGWVQRNSMVYDYCSDPQRDHTQTPEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	1.7	0.9421
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	2.4	0.9154
AT2G25625			unknown protein		Lus10013129 [exp]	2.8	0.9190
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	3.2	0.9125
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	4.0	0.9140
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	6.0	0.9070
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	8.0	0.9090
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	8.8	0.9115
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024425 [exp]	9.6	0.8570
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	12.7	0.9112

Compare expression of checked genes

Lus10041341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.