Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034050 [exp] 87 / 2e-20 ND / Lus10015596 [exp] 84 / 3e-19 ND 41 / 2e-04 Lus10032852 [exp] 74 / 8e-15 AT3G09510 62 / 2e-10 Ribonuclease H-like superfamily protein (.1) Lus10020141 [exp] 71 / 1e-13 AT3G09510 50 / 1e-06 Ribonuclease H-like superfamily protein (.1) Lus10025268 [exp] 68 / 1e-13 ND / Lus10012364 [exp] 66 / 2e-12 ND / Lus10015878 [exp] 64 / 2e-11 AT3G25270 42 / 2e-04 Ribonuclease H-like superfamily protein (.1) Lus10018700 [exp] 64 / 3e-11 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10030004 [exp] 61 / 3e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041342 pacid=23179840 polypeptide=Lus10041342 locus=Lus10041342.g ID=Lus10041342.BGIv1.0 annot-version=v1.0 ATGGTAGCCAACGAGAGAATCCGATCTCGACAGCCACTGGTGGCTTTGCCAAGAGATGAGTCCGGGGGACGGACTGATTGCATGCAGGATTTCACAGACG CACAGGCATTCAAATTTCAAGAAGCTCTTCATGCGGAACTGCTAGCAATCCGTTCCGGGATGGTTTATTTCTGGCTCAGATGTTTGAATATCGCCAAGTT ATTATTGAGTAGAGAAATAGTAATATTTACCGTTTTGGTTCGGGTGGGGAATGACCGAATGAACAATCGGAAGCGAGGTGCATGTTTCGATCTTAGATCC GCTACTAGCTCTGACTGTGCTTGGCAACTCCCCACTAGTCCTCGTCGATCACCTCCACCAGATCACTCTTTCCTCCCGTGGATAGTCGATTTATTGCTAA CAGCACCGCCCCAAATCCTTGCTACTACTGTGGCCACATGCTGGTATGCGTGGAAGGATCGTAACGAGGCTATCTTCAGACAAACTACCGCCATAACCGC GGACCTTCACGATCGAATCTTGAAGGACGCTGCCGATTGGATTCTACCTCCCATTGCCAGCACATCTCCTCCATCACCCCGAGTACAGCCCCCCGACCCC AATCCAATTATTCATCCACTGCCAAGCACTTCACAGATGATAGTGTACTGTGACAGGTCCTTCCACGAGGACTCCCAGAAGGCAGGCTACAGCTTCATTA TAACCGATACGCAAGGGAAAATATTGGATGGACAGGCTAGGACTCTTCTGTGCTCCCATGCCATTGTTGCGGAGGCTTATGCACTGCTTCAAGCCATTAG AGCGTCATCCGCTCTTGACGGACGGACCACCAGCCGAACTGACTGCCTGGAACTTGTTACAGCCTCCCGCAACCCTAAACACAGATGGCCTTGGCAATGC CTAGGCTACCTAGGATCCATCACTGACGAGCTATCCCGCAACCCAAACATCTCTATTTCCTTCACCCCGAGCAAATAA
AA sequence Show only first row Show all	>Lus10041342 pacid=23179840 polypeptide=Lus10041342 locus=Lus10041342.g ID=Lus10041342.BGIv1.0 annot-version=v1.0 MVANERIRSRQPLVALPRDESGGRTDCMQDFTDAQAFKFQEALHAELLAIRSGMVYFWLRCLNIAKLLLSREIVIFTVLVRVGNDRMNNRKRGACFDLRS ATSSDCAWQLPTSPRRSPPPDHSFLPWIVDLLLTAPPQILATTVATCWYAWKDRNEAIFRQTTAITADLHDRILKDAADWILPPIASTSPPSPRVQPPDP NPIIHPLPSTSQMIVYCDRSFHEDSQKAGYSFIITDTQGKILDGQARTLLCSHAIVAEAYALLQAIRASSALDGRTTSRTDCLELVTASRNPKHRWPWQC LGYLGSITDELSRNPNISISFTPSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65005			Polynucleotidyl transferase, r...		Lus10041342 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10040522 [exp]	9.8	0.9625
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	10.0	0.9681
AT1G52190			Major facilitator superfamily ...		Lus10020101 [exp]	11.2	0.9489
AT4G04980			unknown protein		Lus10011209 [exp]	18.1	0.8985
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	18.4	0.9568
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	22.0	0.9548
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	25.3	0.9544
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10005524 [exp]	26.2	0.9463
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	27.2	0.9530
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	27.6	0.9505

Compare expression of checked genes

Lus10041342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.