Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28110 565 / 0 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G22940 531 / 0 F8H FRA8 homolog (.1) AT5G61840 273 / 2e-87 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 270 / 3e-86 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT4G16745 113 / 6e-27 Exostosin family protein (.1.2) AT4G38040 107 / 4e-25 Exostosin family protein (.1) AT5G11130 104 / 5e-24 Exostosin family protein (.1) AT3G57630 103 / 2e-23 exostosin family protein (.1.2) AT3G42180 102 / 2e-23 Exostosin family protein (.1.3) AT5G19670 100 / 3e-22 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037376 [exp] 640 / 0 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10043209 [exp] 274 / 9e-88 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 274 / 9e-88 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 270 / 2e-86 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 270 / 2e-86 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 108 / 3e-25 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 107 / 3e-25 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10002664 [exp] 106 / 8e-25 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 107 / 1e-24 AT5G03795 602 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006500 [exp] 653 / 0 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.012G109200 [exp] 273 / 3e-87 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 273 / 3e-87 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 273 / 4e-87 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 270 / 4e-86 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 241 / 7e-76 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 117 / 3e-28 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.015G107200 [exp] 105 / 3e-26 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.014G171100 [exp] 108 / 2e-25 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.007G058400 [exp] 104 / 4e-24 AT4G38040 649 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10041343 pacid=23179657 polypeptide=Lus10041343 locus=Lus10041343.g ID=Lus10041343.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTCAAGCGACTCAAACCCAAATGCTTCCATCCCAAAATGAGATTGAAGCAGCTCCAACAACACCCGCCGGAGAAGAAGAACAACAACCCGT ATTTCAGATTCTACAAATGGATCCTCTGGATTTCCCTCTCCCTCTATTTCATCACCTCTTTCCTCATTAGCCACAAGCCCATCCTCCCCCTCTCCCAAAC CCATTTCTCCGAATCCCATTCCGCCGTCGCTTCCCGTGCTCTTTTCGAATCATCATCCTCCAATTCGTCTAAGAAGAGCAGCCGGAGTCGGAGCAGGAGT ACTCTGTTGAAGGATTTGAAGATATTCGTCTACGATTTGCCACCGGAGTACAACTCCGATTGGCTGTCCAATGAGAGATGCAGCAATCATTTGTTCGCCT CGGAGGTCGCCATTCACAAAGCGATTGCCAACGACCAAGACGTACGGACTTACGACCCTTACGAGGCAGATTTCTTCTTCGTCCCTGTTTACGTCTCCTG CAACTTCAGCAAAATCAATGGCTTCCCGGCGATTGGCCACGCAAGATCCCTCATTTCCTCTGCCATTGGGCTAATTTCGTCTGATTATCCGTTTTGGAAT CGCTCTCAGGGCGCCGACCACATCTTCGTCGCCTCCCATGATTTTGGTTCTTGCTTCCACACCCTGGAGGACAGAGCGATTGAAGATGGAGTCCCGGAGT TCATGAAACGATCGATCGTATTGCAGACATTTGGGGTTAAATATCGGCATCCGTGTCAGGAAGTGGAGAATGTGGTGATTCCACCTTACGTGTCGCCGGA AAGCGTACGGAGGACGCTTGAGAAGGCTCCGTTGACTGGTCGGCGAGACATTTGGGCGTTCTTCAGGGGGAAAATGGAAGTTCATCCCAAGAATGTCAGC GGCCGATACTATAGCAAGAAAGTTAGGACGGTGATATGGCGAAAGTTCAACGGCGACAGAAGATTCTACCTACAGAGGCAGAGGTTCTCCGGCTACCAGT CAGAGATCGTCCGGTCAACGTTCTGCCTCTGCCCCTTGGGGTGGGCCCCATGGAGCCCACGCTTGGTGGAATCCGTGGCATTGGGTTGCGTCCCGGTGAT AATAGCCGACGGGATACGGCTGCCGTTCCCGGAGGCAGTTCCGTGGCCGGAGATATCCATTACGGTGGCGGAGAAGGACGTGGGGAAGCTCGGGGAGATA CTAGACCACGTGGCGGCTACCAATTTGTCAACAATCCAGCGGAATCTGTGGGACCCGGAAGTGAGAAGGGGGTTGTTGTACAACGTGGGAGTTGAAGAAG GGGACGCCACGTGGCAGGTGCTTTATTCGCTGGCGCAGAAACTGGACCGGTCACGTAGGACGGTCAGGCATTCGGACCACTGA
AA sequence Show only first row Show all	>Lus10041343 pacid=23179657 polypeptide=Lus10041343 locus=Lus10041343.g ID=Lus10041343.BGIv1.0 annot-version=v1.0 MAEFKRLKPKCFHPKMRLKQLQQHPPEKKNNNPYFRFYKWILWISLSLYFITSFLISHKPILPLSQTHFSESHSAVASRALFESSSSNSSKKSSRSRSRS TLLKDLKIFVYDLPPEYNSDWLSNERCSNHLFASEVAIHKAIANDQDVRTYDPYEADFFFVPVYVSCNFSKINGFPAIGHARSLISSAIGLISSDYPFWN RSQGADHIFVASHDFGSCFHTLEDRAIEDGVPEFMKRSIVLQTFGVKYRHPCQEVENVVIPPYVSPESVRRTLEKAPLTGRRDIWAFFRGKMEVHPKNVS GRYYSKKVRTVIWRKFNGDRRFYLQRQRFSGYQSEIVRSTFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFPEAVPWPEISITVAEKDVGKLGEI LDHVAATNLSTIQRNLWDPEVRRGLLYNVGVEEGDATWQVLYSLAQKLDRSRRTVRHSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	0	1
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	6.4	0.9583
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	7.9	0.9563
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	8.4	0.9553
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	9.5	0.9570
AT1G78060			Glycosyl hydrolase family prot...		Lus10019099 [exp]	9.9	0.9477
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	10.4	0.9545
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	10.8	0.9556
AT2G47010			unknown protein		Lus10007453 [exp]	13.5	0.9544
AT5G18460			Protein of Unknown Function (D...		Lus10003100 [exp]	17.5	0.9399
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	20.6	0.9537

Compare expression of checked genes

Lus10041343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.