Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 511 / 5e-170 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 500 / 1e-165 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G28180 435 / 3e-140 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08150 419 / 1e-134 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT5G22910 417 / 3e-134 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT2G28170 416 / 1e-133 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT1G08140 416 / 2e-133 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G13620 399 / 4e-127 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44930 395 / 6e-126 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08135 389 / 2e-123 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037374 [exp] 1235 / 0 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10016153 [exp] 665 / 0 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 648 / 0 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10021412 [exp] 642 / 0 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016152 [exp] 612 / 0 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 481 / 1e-158 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021414 [exp] 462 / 7e-154 AT3G44900 274 / 6e-82 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 375 / 3e-117 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 373 / 4e-117 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098300 [exp] 506 / 2e-168 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 493 / 9e-164 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 442 / 6e-145 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.018G098600 [exp] 405 / 8e-130 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 385 / 1e-121 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 375 / 7e-118 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G171200 [exp] 354 / 3e-110 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 353 / 6e-110 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G182900 [exp] 345 / 5e-107 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.016G127800 [exp] 340 / 8e-105 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10041344 pacid=23179618 polypeptide=Lus10041344 locus=Lus10041344.g ID=Lus10041344.BGIv1.0 annot-version=v1.0 ATGCCGGGTTACGTTCCATCCACTATTGTGTGGGAGAACGCAACATTGTGCTATACTTTTCCTCCAAGGGTTTCGCCAGTCGGAGTTTTCAATGATCGCG ATACCATTTCCCTATTCAACACGATCCTAACCCCAACGCTAACGCATTTCAACATTCAGGTTCTCATCATCTTGACCCTCTGCAACCTCCTCCATTTCTT CCTCCGCCATGCCGGCGTAATTTCATTCGCTTCCCAGTGCATGGCTGGAGTGATTTTAGGCCCGACGTTTCTATCCAAATACAAATACTACACGTACAGG ATATTCAGCCACGAAAGTCAAGACATATTGAACGTGGCGGCTAGAATGGGATACTCGTTATTCATGTTCACAACCGGAGTTAAGACCGACGTCGGAATGA TGCTTAGATCCGGCAGAAAGATTATGATCCTCGGGATCGCATCCGTGCTCGTCCCGTTCATCATCGGCCTTATTTACCAGCTAGAGCGACTGTACATCGG GCCAGGCCTACTAGTGAGGATGGCAATCGTAGGATTCTCGGCGGTCCAAGCCATGACAACTTTCCCGGTGGTCTCCCATCTCTTAGTGGAGCTAAAGCTG ACGAATTCAGAGCTCGGAAGGCTAGCTCTATCGTGCTCCCTAGTCTCGGGACTATTGGCGGCTTGTCTCGAACTGAGCGCCATCATTAGTACGGAGGTAC ACGGGGTGATGAACTCATGCATAACAGTTGCATGGGCTATGTTTGCGGCGTTTGTCTTACGTCCGATTATGCTTTGGGTAATTAAACAGACGCCGCCGGG GCACAAGTTCCATCCGGCGTGTATCCCCGTAATTCTCGGCATGGCATTCGTGTACCAGATATATTTGGACGCTATGAATCAGTCTCAAGCGTTGGGCCCT TTCATATTGGGCCTGGCTGTTCCCTCTGGGCCACCGTTGGGTTCAATGCTGGTTGATAGTATTGAGCCCATAACCAACTCGATTTTCTTCCCACTCTTTG TGGTTACATCAACCATGAGAGGGGACCTTAGTATCATATTTACATCTAATTTTCTTGAAAAATATTACTACATTAGATCCATCCTCGTCGCCCTTTTGGT CAAGTTTGTTGTCTGTTTGCTATTGTCCCTCCCTTGGATGCCTCTCACCGATTCTATTGTTCTTGCTCTCATCATGAGTTCCAAAGGCATTTACGAGCTT GGTGTCTATACTGGTCACAGAGATAGTACAGCCATAGGTGAAGAACTTTACTCTGTTTGCCTCGCATACATTATTCTAAACGCTACCCTCATCCCAATTT TGATAAAGTACCTATACGATCCGTCAAAAAAGCATGCAGGATATCAAGCGAGGAATTTGTTTAGTTTGAAACCCAACACTGAGTTGAAAGTGCTTACTTG CGTGCACAAGCCTCATCAGATTGGCGATATGATTAACTTGCTTGATGTTATGTATCCTACTGAAGAAAATCCGATCTGGGTATACGCTCTTCATCTGGTG GAGTTAATGGGTCGAACCACACCCATGCTTATATCTCACCAGAAGCAAAAAGCCTTCTCAGATAACTGCTCCATAGACGTCATTCTTGCCTTTAATCAGT TTGAAAGGAGGACATTTAGGGCCACAACCGTAAATACCTTCACCTCAATGTCTCAACCAAAGTTCATGCAAGATGACATTTGCACTCTGGCTCTAGACAA ATCCGCCTCTCTCATTCTGATCCCGTTCCACATAACGTGGGGACTCGATGGAAGGATCGAATCGGAAGATACCGCGATGAGAACACTGAATTTCAAAGTC TTGGAAAGAGCCCCTTGCTCGGTAGGGATCTTTTTCAGCCGTGGGAACAATAGTACTAAAGTTAATGATCAGAGCTCAGACGAGCAGGCATCTTTACGGT CTTCTTCGTACTCGGTGTGTATCATATACTTGGGAGGAAGAGACGATCACGAGGCTTTGTGTCTGGCGACACGAATGTGTAGGGACTCATCGATGAGGCT CACGATCGTCCACCTCATTCCGGATGAGCACGACGTTAGTAACAGATCGAGAAACAGGATGACCCATGAAAGATTGTTCGATGACGTGGTGTTGAAACAA GCTTTGAAAGAAGCGTCTGGCCTGCCCAATGTGCACTATACGGATCAATTCGTGCAAGATGGGCCCGGTACCGCAATGGTGATTCGATCCCTTGTGGACG ATCATGATTTGTTTGTGGTTGGGAGACGGAACGACGTTGAGGAGTCGCCTCAAACTACGGGATTGGATGATTGGAGTGAATTTCCGGAACTAGGAATAAT TGGAGACCTATTGGCCTCTAAGGATCTTGAGACCAAAGCTTCTGTATTGGTTGTGCAACAACAAAGACAAATCAAGTAG
AA sequence Show only first row Show all	>Lus10041344 pacid=23179618 polypeptide=Lus10041344 locus=Lus10041344.g ID=Lus10041344.BGIv1.0 annot-version=v1.0 MPGYVPSTIVWENATLCYTFPPRVSPVGVFNDRDTISLFNTILTPTLTHFNIQVLIILTLCNLLHFFLRHAGVISFASQCMAGVILGPTFLSKYKYYTYR IFSHESQDILNVAARMGYSLFMFTTGVKTDVGMMLRSGRKIMILGIASVLVPFIIGLIYQLERLYIGPGLLVRMAIVGFSAVQAMTTFPVVSHLLVELKL TNSELGRLALSCSLVSGLLAACLELSAIISTEVHGVMNSCITVAWAMFAAFVLRPIMLWVIKQTPPGHKFHPACIPVILGMAFVYQIYLDAMNQSQALGP FILGLAVPSGPPLGSMLVDSIEPITNSIFFPLFVVTSTMRGDLSIIFTSNFLEKYYYIRSILVALLVKFVVCLLLSLPWMPLTDSIVLALIMSSKGIYEL GVYTGHRDSTAIGEELYSVCLAYIILNATLIPILIKYLYDPSKKHAGYQARNLFSLKPNTELKVLTCVHKPHQIGDMINLLDVMYPTEENPIWVYALHLV ELMGRTTPMLISHQKQKAFSDNCSIDVILAFNQFERRTFRATTVNTFTSMSQPKFMQDDICTLALDKSASLILIPFHITWGLDGRIESEDTAMRTLNFKV LERAPCSVGIFFSRGNNSTKVNDQSSDEQASLRSSSYSVCIIYLGGRDDHEALCLATRMCRDSSMRLTIVHLIPDEHDVSNRSRNRMTHERLFDDVVLKQ ALKEASGLPNVHYTDQFVQDGPGTAMVIRSLVDDHDLFVVGRRNDVEESPQTTGLDDWSEFPELGIIGDLLASKDLETKASVLVVQQQRQIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	0	1
					Lus10022109 [exp]	1.0	0.8935
					Lus10033844 [exp]	2.4	0.8213
					Lus10028091 [exp]	2.8	0.8114
					Lus10039427 [exp]	6.0	0.7597
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	7.1	0.7704
					Lus10041330 [exp]	7.5	0.7132
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	8.9	0.7806
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	10.0	0.8017
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	12.2	0.7996
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	13.2	0.8122

Compare expression of checked genes

Lus10041344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.