Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16790 186 / 1e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037373 [exp] 228 / 1e-77 AT2G16790 125 / 6e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048200 [exp] 201 / 2e-66 AT2G16790 228 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01202 [flax] [poplar] SKI Shikimate kinase
Representative CDS sequence Show only first row Show all	>Lus10041345 pacid=23179794 polypeptide=Lus10041345 locus=Lus10041345.g ID=Lus10041345.BGIv1.0 annot-version=v1.0 ATGGGAGTTTCTGGTGCTGGTAAAAGCACCGTTGGGCAACTCCTGGGAACCCAGTTGAAATGTAGCTTCCTTGACGCTGATGACTTCCACCCCCATTCCA ATACTGAGAAGATGAGGCAAGGCATTCCCTTAACGCATGAAGATCGAATCCCGTGGCTCCATCTTCTCAAGGACACTCTCCGCCAACATCTCCTGGCAGG GAACACCGTAGTCCTAGGATGCTCATCTCTTCAGAAATCCTACAGGGACATCCTCAGATCGGCCGATCCCCACCAACATTCATCTCCTACCTGCATCCGG TTCGTTCTCCTGGATGCCACAGTGGAATTGCTGACCCGCCGCCTCACAGAAAGAGCTCAACAAGGAACCCATTTCATGCCCCCTAAGCTCCTCAGCTCTC AGTTGGAGTTGCTCCAGATCGATCCCGACGAACCCATTCTCAAAGTAGATGCTTCCCTCCCGCCTCTTCACATCGTCTCCACCATCATCTCCTCCTTCCA AACTTCTGTTGTAAAGGCTCCGCTTAGCTGA
AA sequence Show only first row Show all	>Lus10041345 pacid=23179794 polypeptide=Lus10041345 locus=Lus10041345.g ID=Lus10041345.BGIv1.0 annot-version=v1.0 MGVSGAGKSTVGQLLGTQLKCSFLDADDFHPHSNTEKMRQGIPLTHEDRIPWLHLLKDTLRQHLLAGNTVVLGCSSLQKSYRDILRSADPHQHSSPTCIR FVLLDATVELLTRRLTERAQQGTHFMPPKLLSSQLELLQIDPDEPILKVDASLPPLHIVSTIISSFQTSVVKAPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	1.0	0.8880
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	5.7	0.8721
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	7.5	0.8764
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	9.8	0.8534
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	17.3	0.8610
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	23.2	0.8553
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	25.9	0.8427
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	28.0	0.8695
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10020069 [exp]	28.7	0.8511
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	30.3	0.7859

Compare expression of checked genes

Lus10041345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.