Plant FIBer expression Database

Lus10041346 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44890 224 / 5e-75 RP19, RPL9 ribosomal protein L9 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037372
[exp]
320 / 1e-112 AT3G44890 270 / 4e-93 ribosomal protein L9 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G217000
[exp]
251 / 2e-85 AT3G44890 195 / 2e-63 ribosomal protein L9 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain
PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Representative CDS sequence
>Lus10041346 pacid=23179733 polypeptide=Lus10041346 locus=Lus10041346.g ID=Lus10041346.BGIv1.0 annot-version=v1.0
ATGGCATCCTCATCATACACAGCCGGTGCTCTGACTTGGAACTCTTCCTCTATGCTTCACAATTTTAGCTCCCAACCTAATCAAGTCTCCAAGTTGCCGG
CTAGAAGAGTCGGCATGACGATCGTTTGCCAGAAAAAAGTTAAGAAGACCAGAAAGATAATATTGAAAGAGGACACGGAACATGTGGGAAAGAAGGGGGA
GCTAGTTGATGTGAAAGCTGGCTTCTACAGGAACTTTCTGCTTCCCCTGGGCAAGGCGCAGATTGTCACTCCTACTTTGCTCAAGGAAATGCGGATGGAG
GAGGAAAGAATTGAAGCAGAAAAACAGCGGGTGAAAGAAGAGGCACAGCAGCTTGCTAGAATTTTTGAAACTGTCGGAGCCTTCAAGGTGAAGCGCAAAG
GAGGAAAAGGCAAACTAATATTCGGATCTGTGACTGCTCAAGATCTTGTCGAGATTATCAAGGCACAGCTTCAAAGGGATATAGACAAACGAATGGTGTC
AATGCCGGAGATCCGCGAAACAGGAGAATATGTTGCTGAACTCAAGCTTCACCCTGATGTTAGTGCTAGAGTAAGGGTGAATGTCTTCGCCAACTGA
AA sequence
>Lus10041346 pacid=23179733 polypeptide=Lus10041346 locus=Lus10041346.g ID=Lus10041346.BGIv1.0 annot-version=v1.0
MASSSYTAGALTWNSSSMLHNFSSQPNQVSKLPARRVGMTIVCQKKVKKTRKIILKEDTEHVGKKGELVDVKAGFYRNFLLPLGKAQIVTPTLLKEMRME
EERIEAEKQRVKEEAQQLARIFETVGAFKVKRKGGKGKLIFGSVTAQDLVEIIKAQLQRDIDKRMVSMPEIRETGEYVAELKLHPDVSARVRVNVFAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G44890 RP19, RPL9 ribosomal protein L9 (.1) Lus10041346
[exp]
0 1
AT3G60370 FKBP-like peptidyl-prolyl cis-... Lus10042897
[exp]
1.0 0.9878
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Lus10005719
[exp]
1.4 0.9872
AT3G44890 RP19, RPL9 ribosomal protein L9 (.1) Lus10037372
[exp]
2.4 0.9756
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Lus10035036
[exp]
2.8 0.9746
AT4G34620 SSR16 small subunit ribosomal protei... Lus10027058
[exp]
4.2 0.9816
AT5G54600 Translation protein SH3-like f... Lus10005180
[exp]
4.5 0.9794
AT5G44600 S-adenosyl-L-methionine-depend... Lus10038404
[exp]
5.7 0.9707
AT3G09210 PTAC13 plastid transcriptionally acti... Lus10035543
[exp]
6.8 0.9602
AT5G14910 Heavy metal transport/detoxifi... Lus10014520
[exp]
7.0 0.9754
AT1G75350 EMB2184 embryo defective 2184, Ribosom... Lus10010639
[exp]
7.4 0.9764

Lus10041346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.