Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22880 187 / 4e-62 HTB2, H2B HISTONE H2B, histone B2 (.1) AT1G07790 187 / 4e-62 HTB1 Histone superfamily protein (.1) AT3G45980 186 / 2e-61 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT3G46030 186 / 2e-61 HTB11 Histone superfamily protein (.1) AT3G53650 183 / 1e-60 Histone superfamily protein (.1) AT5G59910 182 / 4e-60 HTB4 Histone superfamily protein (.1) AT2G28720 182 / 7e-60 Histone superfamily protein (.1) AT2G37470 179 / 6e-59 Histone superfamily protein (.1) AT5G02570 172 / 2e-56 Histone superfamily protein (.1) AT3G09480 167 / 1e-54 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037371 [exp] 192 / 4e-64 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 191 / 1e-63 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10017292 [exp] 191 / 2e-63 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10005897 [exp] 189 / 1e-62 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10005893 [exp] 188 / 1e-62 AT3G45980 234 / 8e-81 HISTONE H2B, Histone superfamily protein (.1) Lus10016156 [exp] 188 / 2e-62 AT3G45980 231 / 1e-79 HISTONE H2B, Histone superfamily protein (.1) Lus10040855 [exp] 187 / 6e-62 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10017456 [exp] 186 / 1e-61 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10023753 [exp] 183 / 1e-60 AT2G37470 203 / 7e-69 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029900 [exp] 189 / 8e-63 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.010G230600 [exp] 188 / 1e-62 AT1G07790 205 / 3e-69 Histone superfamily protein (.1) Potri.010G230801 [exp] 188 / 1e-62 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.010G231300 [exp] 187 / 5e-62 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.008G030600 [exp] 186 / 7e-62 AT5G59910 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091200 [exp] 186 / 2e-61 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.009G028001 [exp] 185 / 2e-61 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.010G230701 [exp] 185 / 3e-61 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.017G123700 [exp] 184 / 5e-61 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091400 [exp] 184 / 8e-61 AT2G28720 186 / 1e-61 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10041347 pacid=23180024 polypeptide=Lus10041347 locus=Lus10041347.g ID=Lus10041347.BGIv1.0 annot-version=v1.0 ATGGCGCCCAAGGCAGCGGAGAAGAAGCCGGCAGAGAAGAAGCCAGCCGAGAAGGCACCGGCGGAGAAGAAGCCCAGAGCCGAAAAGAAACTCCCCAAGG AAGGAGGCGCCGCGGCCGCCGACAAGAAGAAGAAGCGCAACAAGAAGAACGTCGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAAGTCCACCC TGACATCGGCATCTCCAGCAAAGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTGCTGAGTCCTCCAGGCTCGCAAGGTAC AACAAGAAGCCAACCATCACTTCCAGGGAAATCCAGACCGCCGTCCGCCTAGTCCTCCCCGGTGAGCTCGCCAAACACGCCGTCTCTGAAGGAACCAAGG CCGTCACCAAGTTTACCAGCTCGTGA
AA sequence Show only first row Show all	>Lus10041347 pacid=23180024 polypeptide=Lus10041347 locus=Lus10041347.g ID=Lus10041347.BGIv1.0 annot-version=v1.0 MAPKAAEKKPAEKKPAEKAPAEKKPRAEKKLPKEGGAAAADKKKKRNKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAAESSRLARY NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	0	1
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	1.0	0.9880
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	1.7	0.9838
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	2.4	0.9865
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	2.8	0.9824
AT2G30620			winged-helix DNA-binding trans...		Lus10006562 [exp]	4.5	0.9532
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	4.9	0.9775
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	5.0	0.9808
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10013849 [exp]	5.3	0.9488
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	5.7	0.9473
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	5.7	0.9458

Compare expression of checked genes

Lus10041347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.