Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44880 782 / 0 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT4G25650 273 / 6e-85 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT2G24820 157 / 1e-41 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 61 / 9e-10 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037370 [exp] 1029 / 0 AT3G44880 791 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Lus10025414 [exp] 278 / 8e-87 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 276 / 6e-86 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 276 / 8e-86 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 274 / 7e-85 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 273 / 1e-84 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 266 / 5e-82 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 261 / 3e-80 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 254 / 2e-77 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217200 [exp] 817 / 0 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 664 / 0 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.003G218900 [exp] 282 / 3e-88 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 266 / 2e-82 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 266 / 3e-82 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 262 / 1e-80 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 260 / 4e-80 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 257 / 6e-79 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.006G267300 [exp] 172 / 1e-46 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.018G015700 [exp] 171 / 2e-46 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10041348 pacid=23179897 polypeptide=Lus10041348 locus=Lus10041348.g ID=Lus10041348.BGIv1.0 annot-version=v1.0 ATGGCGCTTCTCGTTTCCACGACATGCCTCACCAAATCTTTTCTGTCTCCAGCCACTCCAACCCACAGACCTTCCTGCCTTCTATCCTCCAAAAGCGCTG CTACGAAACTGCCGCGGAAAACAACGCAACGACTCTCCTCCCCTCTACGCGTAGCGGCACCGCCTTCCCCGTCTGTACAGACGAATGAAGACGAAGGAGG AGAGAAAGAAGAGGGCTTGTTGTCAGATTACGAAATCGACGATGAATATCGGGAAGAAGGTGATGGTGACAAGTTCATTTGGAAGGATCACTGGTACCCA GTTTCCTTAATTGAGGATTTGGACCCTGCCTTGCCTACCCCGTTCCAGCTTCTGGGTCTAGATTTGGTTCTTTGGTTTGATAGCGTCAAGCAGGAATGGG TTGCTTTTGATGATAAGTGCCCCCACAGGCTTGCTCCTTTGTCCGAAGGAAGGATCGATGAAAATGGGGACTTGCAATGTTCATACCACGGGTGGTCATT TGACGGTAGTGGATCTTGCACTAGGATTCCTCAAGCTATGGGACAAGGTCCTGAAGCTCGTGCTGTTAACTCTCCAAGGGCATGTGCTACTCGATTCCCT ACACTGGTCTCTCAAGGCCTACTCTTTGTCTGGCCAGACGACAAGGCGTGGGAAAAAGCTCTTGCTACCAAGCCCCCAATGTTGCCGGAGGACTTTGACA AGCCAGAATTTTCGTCAGTGACGATTCAGCGAGATCTTTACTATGGGTATGATACCCTTATGGAGAATGTATCTGATCCTTCCCACATTGATTTTGCTCA TCATAAGGTAACTGGAAGGAGAGACAGAGCCAAGCCCTTGCCGTTTAAACTGGAAAAGAAAGGGCCTTGGGGATTCGCAGGCGCCAATGAAGGCAACCCA AGGATCACTGCGACGTTTATCGCACCTTGTTACTATTTGAACAAGGTGGAGATAGACACAAAACTGCCTATACTCGGAGACCAGAAGTGGGTAATATGGA TCTGCTCATTCAACGTCCCAATGGCACCCGGCAAGACACGTTCAATCGTTTGCAGTGCTAGAAACTTCTTCCAGTTCACAATGCCCGGTCCAGCATGGTG GCAGGTGTTCCCAAGATGGCAGGAGCACTGGACCTCTAACAAGGTATACGACGGCGACATGATCGTCCTTCAAGGTCAAGAAAAAGTCTTACTATCGAAA TCACTTGAACAAGGCTCCGGAGGAGACGTAAATGAACAATACACCAAAATCACATTCACACCAACTCAAGCCGACCGCTTTGTATTAGCATTCCGCAATT GGCTCAGACGACACGGCAACAGCCAACCTGAATGGTTCAGCTCCACTCCTCTACAGCAGCCTCTACCGTCAACTGTCCTTTCAAAACGTCAGATGCTGGA TAGATTCGAGCAGCACACACAGAAATGCTCGTCCTGTAAAAAGGCTTACTCAACTTTCCAGACTTTGCAGAAGATTCTGATCGCCATGACTGTCGCTCTA TGCGGAATAGCTGGAGTTCCTGATGATGTTAAGTTAAGAGTTTTACTTGCTGGATTGGGCCTCACAAGTGCAGGTTTTGCTTACTTTCTGAATCGCCTGG AGAAGAACTTTGTCTTCGTCGACTATGTACATGCCGAGATTGATTAG
AA sequence Show only first row Show all	>Lus10041348 pacid=23179897 polypeptide=Lus10041348 locus=Lus10041348.g ID=Lus10041348.BGIv1.0 annot-version=v1.0 MALLVSTTCLTKSFLSPATPTHRPSCLLSSKSAATKLPRKTTQRLSSPLRVAAPPSPSVQTNEDEGGEKEEGLLSDYEIDDEYREEGDGDKFIWKDHWYP VSLIEDLDPALPTPFQLLGLDLVLWFDSVKQEWVAFDDKCPHRLAPLSEGRIDENGDLQCSYHGWSFDGSGSCTRIPQAMGQGPEARAVNSPRACATRFP TLVSQGLLFVWPDDKAWEKALATKPPMLPEDFDKPEFSSVTIQRDLYYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLEKKGPWGFAGANEGNP RITATFIAPCYYLNKVEIDTKLPILGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVFPRWQEHWTSNKVYDGDMIVLQGQEKVLLSK SLEQGSGGDVNEQYTKITFTPTQADRFVLAFRNWLRRHGNSQPEWFSSTPLQQPLPSTVLSKRQMLDRFEQHTQKCSSCKKAYSTFQTLQKILIAMTVAL CGIAGVPDDVKLRVLLAGLGLTSAGFAYFLNRLEKNFVFVDYVHAEID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	0	1
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	1.0	0.9197
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	1.4	0.8697
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	3.5	0.8691
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	6.9	0.8310
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	7.1	0.8321
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	7.2	0.8372
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	7.3	0.7797
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	10.6	0.8081
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	14.7	0.7546
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	15.5	0.7979

Compare expression of checked genes

Lus10041348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.