Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08170 140 / 7e-41 Histone superfamily protein (.1) AT3G53650 121 / 8e-35 Histone superfamily protein (.1) AT2G37470 120 / 9e-35 Histone superfamily protein (.1) AT2G28720 120 / 2e-34 Histone superfamily protein (.1) AT5G59910 119 / 4e-34 HTB4 Histone superfamily protein (.1) AT1G07790 119 / 6e-34 HTB1 Histone superfamily protein (.1) AT3G45980 118 / 1e-33 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT3G46030 118 / 1e-33 HTB11 Histone superfamily protein (.1) AT5G22880 118 / 1e-33 HTB2, H2B HISTONE H2B, histone B2 (.1) AT5G02570 117 / 1e-33 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036579 [exp] 184 / 6e-58 AT2G27970 86 / 2e-21 CDK-subunit 2 (.1) Lus10023753 [exp] 120 / 2e-34 AT2G37470 203 / 7e-69 Histone superfamily protein (.1) Lus10005893 [exp] 118 / 1e-33 AT3G45980 234 / 8e-81 HISTONE H2B, Histone superfamily protein (.1) Lus10040855 [exp] 118 / 1e-33 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10017456 [exp] 118 / 1e-33 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10005897 [exp] 118 / 1e-33 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10041347 [exp] 117 / 2e-33 AT3G45980 226 / 3e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10037371 [exp] 117 / 2e-33 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 117 / 3e-33 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212200 [exp] 131 / 1e-38 AT1G08170 129 / 1e-37 Histone superfamily protein (.1) Potri.010G230701 [exp] 119 / 4e-34 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.008G030500 [exp] 119 / 5e-34 AT5G59910 190 / 4e-63 Histone superfamily protein (.1) Potri.008G030400 [exp] 119 / 6e-34 AT5G59910 191 / 2e-63 Histone superfamily protein (.1) Potri.008G029900 [exp] 118 / 9e-34 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.004G091200 [exp] 118 / 1e-33 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.010G230600 [exp] 118 / 1e-33 AT1G07790 205 / 3e-69 Histone superfamily protein (.1) Potri.010G230801 [exp] 118 / 1e-33 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.017G123700 [exp] 118 / 1e-33 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.010G231300 [exp] 118 / 1e-33 AT1G07790 177 / 3e-58 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10041351 pacid=23179770 polypeptide=Lus10041351 locus=Lus10041351.g ID=Lus10041351.BGIv1.0 annot-version=v1.0 ATGGCACCGAGGCGGCGGTCGGCGGGGAGAGTGGTCGGAGTGGTTCGATCAACGAGGAAAGTGGTAAAGGAAACTGTTGAAGTCTCCATCCTTGCTGGCG ACACCCAGGAGACGACTCCGGAAGACAACACCGAAGACATCAACCTTTTGGATACCGAAGAGTTAATTGACGTCGTTACCCCCGAAGCAGGAGTAAAATT ACAAGAAGACGCAACCACCACCTCCACCGTGAGAACCATCCCCGTGGAGGACGCTGGACCGGAACGGGAGGAGGAACTAGTGATCAGTGAAGATCGTCAA TTCGAAGACGCAAAACCAAAAAAGGAAGAAAAGAAAGCACCGGAAAAGGAGAAAAAGGTAAATAAGAAGAAGAGAAAGAGCCGATTTGTGGAAGGAGGGG AAGGGTACAGGAGGTACGTGTACAAGGTGATGAAGCAGGTGCATCCAGATATGAAGATATCCGGGGTTGCTATGAGCATCATCAACAGTTTGATGAAGGA CATGTTCGAGCGAATTGCTGACGAGGCTGCCACGCTGTCGCGCTACTCCAAGAGGATGACGATCTCGTCTAAGGAGATCCAGGACGCCGTCAAGCTTGTT CTACCCGGAGAGCTCGGGAAGCACGCTGTCGCCGAGGGATCCAAGGCTGTTGCTAACTACGCCTCTTACTCCCACAACAAGTGA
AA sequence Show only first row Show all	>Lus10041351 pacid=23179770 polypeptide=Lus10041351 locus=Lus10041351.g ID=Lus10041351.BGIv1.0 annot-version=v1.0 MAPRRRSAGRVVGVVRSTRKVVKETVEVSILAGDTQETTPEDNTEDINLLDTEELIDVVTPEAGVKLQEDATTTSTVRTIPVEDAGPEREEELVISEDRQ FEDAKPKKEEKKAPEKEKKVNKKKRKSRFVEGGEGYRRYVYKVMKQVHPDMKISGVAMSIINSLMKDMFERIADEAATLSRYSKRMTISSKEIQDAVKLV LPGELGKHAVAEGSKAVANYASYSHNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	0	1
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	1.4	0.9906
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	1.7	0.9767
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	2.0	0.9891
AT5G24620			Pathogenesis-related thaumatin...		Lus10023896 [exp]	2.0	0.9653
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	3.5	0.9577
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	3.9	0.9645
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	4.6	0.9523
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	5.2	0.9474
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025325 [exp]	7.7	0.9200
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	8.1	0.9363

Compare expression of checked genes

Lus10041351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.