Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27920 566 / 0 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT3G10410 146 / 2e-38 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT1G15000 141 / 4e-37 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G45010 138 / 1e-35 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 132 / 1e-33 SCPL47 serine carboxypeptidase-like 47 (.1) AT4G30810 109 / 1e-25 SCPL29 serine carboxypeptidase-like 29 (.1) AT3G52000 99 / 4e-22 SCPL36 serine carboxypeptidase-like 36 (.1) AT4G12910 99 / 4e-22 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G63470 99 / 5e-22 SCPL40 serine carboxypeptidase-like 40 (.1) AT1G43780 98 / 9e-22 SCPL44 serine carboxypeptidase-like 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036578 [exp] 870 / 0 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10035555 [exp] 494 / 2e-173 AT2G27920 492 / 1e-172 serine carboxypeptidase-like 51 (.1.2.3) Lus10027734 [exp] 483 / 4e-169 AT2G27920 489 / 2e-171 serine carboxypeptidase-like 51 (.1.2.3) Lus10042334 [exp] 136 / 5e-35 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 132 / 7e-34 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041339 [exp] 133 / 1e-33 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10037958 [exp] 127 / 1e-31 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 124 / 2e-30 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041000 [exp] 115 / 1e-27 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003100 [exp] 599 / 0 AT2G27920 589 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.006G119300 [exp] 543 / 0 AT2G27920 515 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.004G215400 [exp] 130 / 7e-33 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.008G129800 [exp] 129 / 1e-32 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G060100 [exp] 129 / 1e-32 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G034800 [exp] 129 / 1e-32 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.008G129850 [exp] 128 / 2e-32 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.010G227700 [exp] 127 / 1e-31 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.018G103100 [exp] 116 / 3e-28 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.012G105500 [exp] 113 / 5e-27 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10041352 pacid=23179875 polypeptide=Lus10041352 locus=Lus10041352.g ID=Lus10041352.BGIv1.0 annot-version=v1.0 ATGCCCAAGCTATGGCCTCTTCTCCTTCTACCGCTTCTTCTAGCCTCCGCCGCCGCCAGGATTACTTCCAAGACTAAGGGAGATGGATCTGAAACGTGGG GCTATGTTCAAGTCAGACCCAAGGCACACATGTTCTGGTGGCTGTACAAGAGCCCCTACAGAGTTGAAGATCCCGCTAAGCCATGGCCAACCATTCTCTG GCTCCAAGGTGGACCTGGAGCGTCAGGAGTGGCGATTGGGAATTTCCAGGAAGTGGGCCCACTGGACGCAAATCTGAAGCCGAGGAACTCGACCTGGCTC AAAATGGCGGATCTCCTCTTCGTCGATTCGCCGGTGGGGACGGGGTACAGCTTCGTCGAACAAGGAGGATCGATGGTGAAAACGGATGCTGAAGCAGGGG AGGATTTGACGGCGCTGTTGAAGGAGATATTCAACAACAACGGAGAAATGCAGAAGCGGCCGCTGTACATAGTTGCAGAGTCCTACGGCGGGAAATTCGC CGCCACGTTAGGGTTGTCAGCTCTGAAAGCGATCGAATCGGGGGAGCTGAAGATGAAGCTGGGCGGGATAGCATTGGGAGACAGCTGGATTTCGCCTGAA GATTTTGTGCTCTCTTGGGGGCCTTTGCTCGGATCGGTTTCTCGGTTGGATAGCAATGGTGTTGAACTGGCGAACAGATTGGCGGAAGGGATCAAGAAGC AGATTGGAGAGGAGGAGTATACGGAAGCTACGAATTCGTGGTCTGAACTGGAAGGAGTGATTTCCGAGTACTCCAACGATGTGGATTTCTACAACTTCAT GCTGGATTCCGCGTCGGATCCCGTGTCGATGACTGCTGCCGAGCTGATGCTGGGGAGAACCAGGAGGAGCTATTCGAGATATCTGAGTGATGGTAATGGC GATGGAGTTGATATTGAGAAATTGATGAACGGTGTTATTAGGAAGAAGCTCGGCATCATCCCTCCAAACATCAAGTGGGGAGAGCAGTCTGGATCTGTGT TCAGTACTCTGGCTGCTGATTTCATGAAGGCGAGGATTGATGAGGTTGATCAACTTTTATCCAAAGGAATCAACGTGACTATATACAACGGACAGCTGGA CATCATTTGTGCGACACTAGGGACAGAAGCTTGGGTCCAAAAGCTCAAGTGGAAGGAGCTGTCGAATTTTACAGCGACGAAGAGGAATCCGCTGTATTGC GGTGGGGAAGGGGGTACAAAGGCGTTCCTCAAGTCCTATAAAAACCTTCACTTCTATTGGATTCTTGGTGCCGGCCATTTTATCCCGGTGGACCAACCTT GCATTGCACTAAACATGGTTCGTCAAATTACGCAGTCGCCGGCTGCTCCTGTGGTTCAACTTGCGACTCTCCGACGGTAG
AA sequence Show only first row Show all	>Lus10041352 pacid=23179875 polypeptide=Lus10041352 locus=Lus10041352.g ID=Lus10041352.BGIv1.0 annot-version=v1.0 MPKLWPLLLLPLLLASAAARITSKTKGDGSETWGYVQVRPKAHMFWWLYKSPYRVEDPAKPWPTILWLQGGPGASGVAIGNFQEVGPLDANLKPRNSTWL KMADLLFVDSPVGTGYSFVEQGGSMVKTDAEAGEDLTALLKEIFNNNGEMQKRPLYIVAESYGGKFAATLGLSALKAIESGELKMKLGGIALGDSWISPE DFVLSWGPLLGSVSRLDSNGVELANRLAEGIKKQIGEEEYTEATNSWSELEGVISEYSNDVDFYNFMLDSASDPVSMTAAELMLGRTRRSYSRYLSDGNG DGVDIEKLMNGVIRKKLGIIPPNIKWGEQSGSVFSTLAADFMKARIDEVDQLLSKGINVTIYNGQLDIICATLGTEAWVQKLKWKELSNFTATKRNPLYC GGEGGTKAFLKSYKNLHFYWILGAGHFIPVDQPCIALNMVRQITQSPAAPVVQLATLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10041352 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	6.0	0.8342
					Lus10034878 [exp]	14.1	0.8011
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	14.4	0.8384
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	16.1	0.8336
AT3G55420			unknown protein		Lus10040295 [exp]	16.9	0.8158
AT4G17100			unknown protein		Lus10040133 [exp]	17.0	0.8063
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	20.4	0.7972
AT3G61490			Pectin lyase-like superfamily ...		Lus10028766 [exp]	21.6	0.8170
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	29.7	0.8348
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	32.1	0.8177

Compare expression of checked genes

Lus10041352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.