Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 563 / 0 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 443 / 1e-154 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 442 / 3e-154 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 320 / 8e-107 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 115 / 2e-29 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT1G03380 48 / 1e-05 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT2G47720 42 / 3e-05 unknown protein AT1G54710 45 / 7e-05 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036577 [exp] 803 / 0 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 469 / 2e-164 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 469 / 5e-164 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 462 / 3e-161 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 452 / 1e-157 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 410 / 1e-141 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 410 / 6e-141 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10033817 [exp] 52 / 7e-07 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10018960 [exp] 51 / 1e-06 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207865 [exp] 638 / 0 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 627 / 0 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 466 / 1e-163 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 462 / 2e-162 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 458 / 2e-160 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 138 / 9e-37 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.013G028200 [exp] 46 / 4e-05 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 46 / 5e-05 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.001G417000 [exp] 45 / 0.0001 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.011G132700 [exp] 44 / 0.0002 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10041353 pacid=23179798 polypeptide=Lus10041353 locus=Lus10041353.g ID=Lus10041353.BGIv1.0 annot-version=v1.0 ATGGCGACTCTTTCTTCTTACTCATCTCCTTCCGCCTGGCCCGATCAGAACCCTAATACAGCTGCACTCCTCCGCCAGCAGGACGGCGACGAACAGCAGC TCGACGATCCCCACCCTTACGATTCCCTGTCCTCGATCATACCTCCGGAACACCACCACCAACCGGATCCGATTGTTCAGCATGCTAGCCCCGTCTCTTC TCCCCCAGAGTCATCGTCGTCTCCTCCCCCTCCCGTTTCTCTTCTCCATCTTTCCTTCAACCAGGACTCTGGATGCTTCGCCGCCGGCACCGATCACGGC TTCCGGATCTATAACTGCGATCCCTTCCGGGAGATATTCCGCCGGGACTTCGATCGGCGTGGGGGCGGAATCGGAGCTGTGGAGATGCTTTTCCGCTGTA ACATTTTGGCTCTCGTTGGCGGTGGTTCCGACCCGCAGTACCCTCCCAATAAGGTTATGATTTGGGACGATCATCAGAGTCGATGCATCGGCGAGCTCTC GTTTAGGTCTGAGGTTCGATCTGTGAAGCTCAGACGGGACAGGATAATTGTGGTTCTGGAGCAGAAGATTTTTGTCTACAATTTCGCGGATTTGAAGCTG TTGCATCAGATTGAGACGATTGCCAATCCTAAAGGGCTTTGTGCTGTGTCACACGGTTCAGGTTCGCTTGTGCTGGTGTGCCCAGGTTTGCAGAAGGGTC AAGTTCGGGTGGAGCATTATGCCTCTAAGAGGACCAAGTTCATCATGGCGCACGACTCCAGGATTGCTTGTTTTGCTCTCACGCAGGACGGCCAGTTACT AGCTACCACCAGCACTAAAGGTACCCTCATTAGGATTTTCAGCACAGCCGACGGTGGCCTTCTTCAAGAGGTGAGGAGAGGTGCAGACAGAGCAGAGATT TACAGTTTAGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTTTGTAGTGATAAAGGGACAGTTCATGTCTTCAGCCTTAAGATGAACCCCGGGATAAAAA TGATCGACACTTCAGCAGGGGTGAATGATCCAAATCGTGCTCCTGGTTCTCCTGGCTCATCATTGTCATTTTTCAAAGGCGTATTACCAAAGTATTTTAG CTCTGAGTGGTCGGTTGCCCAGTTTAGATTGGTGGAAGGCGCGCAGTACATTGTCGCTTTTGGTCACCAAAAGAACACAGTAGTTATACTTGGGTTTGAT GGAAGCTTCTATCGATGCCAGTTCGACCCAGCAAGCGGCGGGGAGATGAAACAGCTGGAATATCACAACTTTCTGAAACCAGAAGGTGCCTTCTAA
AA sequence Show only first row Show all	>Lus10041353 pacid=23179798 polypeptide=Lus10041353 locus=Lus10041353.g ID=Lus10041353.BGIv1.0 annot-version=v1.0 MATLSSYSSPSAWPDQNPNTAALLRQQDGDEQQLDDPHPYDSLSSIIPPEHHHQPDPIVQHASPVSSPPESSSSPPPPVSLLHLSFNQDSGCFAAGTDHG FRIYNCDPFREIFRRDFDRRGGGIGAVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL LHQIETIANPKGLCAVSHGSGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATTSTKGTLIRIFSTADGGLLQEVRRGADRAEI YSLAFSSTAQWLAVCSDKGTVHVFSLKMNPGIKMIDTSAGVNDPNRAPGSPGSSLSFFKGVLPKYFSSEWSVAQFRLVEGAQYIVAFGHQKNTVVILGFD GSFYRCQFDPASGGEMKQLEYHNFLKPEGAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	1.0	0.9332
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	1.4	0.9015
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	2.4	0.9005
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	3.5	0.8755
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	3.9	0.8815
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	4.0	0.8956
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	4.0	0.8595
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	7.1	0.8419
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	7.4	0.8538
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	8.8	0.8618

Compare expression of checked genes

Lus10041353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.