Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02970 541 / 0 ATWEE1, WEE1 WEE1 kinase homolog (.1) AT4G19110 98 / 1e-21 Protein kinase superfamily protein (.1.2.3) AT1G53570 97 / 2e-21 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT3G59410 97 / 7e-21 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT1G30270 94 / 1e-20 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 94 / 1e-20 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G76040 94 / 2e-20 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G04810 94 / 4e-20 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G50240 94 / 4e-20 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G12680 93 / 4e-20 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036576 [exp] 871 / 0 AT1G02970 541 / 0.0 WEE1 kinase homolog (.1) Lus10012799 [exp] 101 / 2e-22 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10033979 [exp] 97 / 3e-21 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10042816 [exp] 96 / 4e-21 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 93 / 4e-20 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10038123 [exp] 93 / 7e-20 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10031834 [exp] 92 / 7e-20 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10014976 [exp] 93 / 1e-19 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10029657 [exp] 92 / 1e-19 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208251 [exp] 623 / 0 AT1G02970 572 / 0.0 WEE1 kinase homolog (.1) Potri.014G132400 [exp] 577 / 0 AT1G02970 531 / 0.0 WEE1 kinase homolog (.1) Potri.003G101600 [exp] 102 / 3e-23 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G128300 [exp] 100 / 2e-22 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.014G104200 [exp] 97 / 1e-21 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.005G251500 [exp] 97 / 2e-21 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.008G195800 [exp] 97 / 7e-21 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.001G018700 [exp] 96 / 9e-21 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.018G119200 [exp] 95 / 1e-20 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 94 / 1e-20 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041354 pacid=23179997 polypeptide=Lus10041354 locus=Lus10041354.g ID=Lus10041354.BGIv1.0 annot-version=v1.0 ATGAAGGCAACATTGGCCGCGCACATGCAAACTCAGCTAGGGGTTCCTCTCCAGAAGTACCAGCAGCAACCTTCTGCTGCATCCAGCTCCAATCCATCTT CTCGCTTCCAGAGTCTACTGGAGTCTGTGGCTACGGACGCGCCTCGTACTTCCTCCGAGATCGCCGATGTGGACCTTGACGACAAAGATTTCATTCTCAG CCAGGATTTCTTCTGTACTCCTGATTACATTACTCCAGACAACCAAAATCTGCTCAACAGCTTCGATGGGAACAAGGTAAACGTTCAGTGCCCTGAATCA CCGGAGAAACTCACCACTGTCAAAAGCAAAAAGCGGCGACAGGATGCAGTAGATGGAACCTCAGACATTCCCTTTAGCCCCTCATTAGATCAGCTGTTAA TGTTGGACATAGGAACGGATGCATTTGGCTCACATGAAATGAAGACTGAAGAAAAGTTTGTCGAAAGTAGGAAGCCTAAAAGCTATGTACCGCAGTCGGC TGTGGCTTTAAGGTGTCGTGTGATGCCTCCTCCGTGCATTCAGAACCCATATCTAGCAGAAGCTTCAACGACCGTTGTTGATCCTTTTAGCAATCAAAGA GTGAAGTGTGCAGATATCTTTTCATCAGTTGCGGGTGGTAATGGTCTTTCAAGGTACCACACTGATTTTCACGAGCTTCAGCAAATTGGTACTGGAAACT TCAGTCGGGTCTTCAAAGTTATGAGGAGACTAGATGGATGCTTGTATGCTGTGAAGCATATTACTAGACAGTTGCACCAAGATGCACTCAGGCGGAAGGC ACTCATGGAAGTTCAAGCTTTGGCTGCTTTAGGATGCCATGCAAACATTGTCGGATACTACTCTTCTTGGTTTGAAAATGAACAGCTATACATTCAGATG GAGTTATGTGATGGCAGTTTGTCCATTGACACTTTGCAGAAGCGACTTACAGAGCCAGAAGTCCTGACTGTTCTGCATCAGATCGCAAAAGCACTGGTAT ACATACATGACAGAGGAGTAGCTCATCTAGATGTGAAACCTGATAATATTTATGCCAAGAACGGAATTTACAAGCTAGGTGACTTTGGATGTTCAAGTCG CCTCGATAAAAGCCTTCCAATTGAAGAGGGTGATGCACGATATATGCCGCAAGAGATACTAAATGAGAACTACGATCATCTAGATAAAGTCGATATCTTC TCCCTGGGAGCTTCTATTTACGAGCTTGTAAGAGCTTCCCCTTTGCCAGAATCAGGATCCTTATATTTAAACCTCAAGGAGGGAAAATTACCACTCCTTC CGGGTCACTCGCTGCAGTTTCAGAACTTACTCAAGGCAATGGTAGACCCAGATCCTGTTCGGCGCCCTTCTGCAAGGGATTTGGTAGAGAACCCATTGTT TGGCAAAGGACATAGATGCTTGAAGACGTAA
AA sequence Show only first row Show all	>Lus10041354 pacid=23179997 polypeptide=Lus10041354 locus=Lus10041354.g ID=Lus10041354.BGIv1.0 annot-version=v1.0 MKATLAAHMQTQLGVPLQKYQQQPSAASSSNPSSRFQSLLESVATDAPRTSSEIADVDLDDKDFILSQDFFCTPDYITPDNQNLLNSFDGNKVNVQCPES PEKLTTVKSKKRRQDAVDGTSDIPFSPSLDQLLMLDIGTDAFGSHEMKTEEKFVESRKPKSYVPQSAVALRCRVMPPPCIQNPYLAEASTTVVDPFSNQR VKCADIFSSVAGGNGLSRYHTDFHELQQIGTGNFSRVFKVMRRLDGCLYAVKHITRQLHQDALRRKALMEVQALAALGCHANIVGYYSSWFENEQLYIQM ELCDGSLSIDTLQKRLTEPEVLTVLHQIAKALVYIHDRGVAHLDVKPDNIYAKNGIYKLGDFGCSSRLDKSLPIEEGDARYMPQEILNENYDHLDKVDIF SLGASIYELVRASPLPESGSLYLNLKEGKLPLLPGHSLQFQNLLKAMVDPDPVRRPSARDLVENPLFGKGHRCLKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10041354 [exp]	0	1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	6.4	0.9230
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	12.9	0.9086
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	18.2	0.9071
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	18.9	0.8856
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	20.4	0.9043
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	21.7	0.9012
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	23.0	0.9030
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	24.7	0.8917
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	25.1	0.9021
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	25.5	0.8872

Compare expression of checked genes

Lus10041354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.