Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47810 155 / 6e-49 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT5G47640 143 / 1e-43 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT4G14540 141 / 3e-43 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT2G13570 142 / 4e-43 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G38880 135 / 1e-41 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT1G09030 135 / 3e-41 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) AT3G53340 135 / 7e-41 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 131 / 3e-39 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 122 / 3e-35 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 117 / 7e-33 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036575 [exp] 239 / 2e-81 AT2G47810 177 / 2e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10020899 [exp] 145 / 7e-44 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10033477 [exp] 145 / 7e-44 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10004493 [exp] 142 / 9e-44 AT1G09030 180 / 2e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10029908 [exp] 142 / 9e-44 AT1G09030 179 / 7e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10036637 [exp] 141 / 7e-43 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 140 / 3e-42 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10035854 [exp] 140 / 4e-42 AT4G14540 181 / 4e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 139 / 5e-42 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132600 [exp] 166 / 5e-53 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.008G210300 [exp] 155 / 9e-49 AT2G47810 176 / 1e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.013G019600 [exp] 150 / 4e-47 AT1G09030 171 / 9e-56 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.005G027400 [exp] 145 / 5e-45 AT1G09030 175 / 3e-57 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.016G006100 [exp] 142 / 2e-43 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 141 / 5e-43 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 140 / 4e-42 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 139 / 4e-42 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 138 / 7e-42 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 139 / 2e-41 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10041355 pacid=23179925 polypeptide=Lus10041355 locus=Lus10041355.g ID=Lus10041355.BGIv1.0 annot-version=v1.0 ATGGTGGATAACTACTTCGCCCATGCTTCTTCCACCACCAGAGACAACAACACCTTCCCCTTCGACGACTTCTCAGGAGAAGCAGAAGCCATATCCAGCT CCGTGGCGGCCGCCGCGGGCCCACAAGACAGGATGTTGCCGATAGCGAATGTGGGGAGGATGATGAAGCAGATCCTGCCGCCAAACGCCAAGATCTCCAA AGAGGCCAAGGAGACGATGCAAGAGTGCGTTTCGGAGTTCATCAGCTTCGTGACCGGGGAAGCATCGGATAAGTGTCACAAGGAGAAGCGGAAGACGGTC AACGGCGACGACGTCTGCTGGGCGCTTTCATCGTTAGGGTTTGATGACTACTGCTCCCCTCTCAAAAGGTACTTGCTCCGCTACAGGGAGCTCGAAGGGG AGAGAGCTGCCAGATCGGATTATAATACGGCGCCGTCTGGGTCCGGAAAGAGGACAGCTCGGCAGCAGGAGGAGGAGGAAGAGGAGGAGGTACTTCATCA TCATCATTCCAAGATCTGTAATTAA
AA sequence Show only first row Show all	>Lus10041355 pacid=23179925 polypeptide=Lus10041355 locus=Lus10041355.g ID=Lus10041355.BGIv1.0 annot-version=v1.0 MVDNYFAHASSTTRDNNTFPFDDFSGEAEAISSSVAAAAGPQDRMLPIANVGRMMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV NGDDVCWALSSLGFDDYCSPLKRYLLRYRELEGERAARSDYNTAPSGSGKRTARQQEEEEEEEVLHHHHSKICN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10041355 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10016268 [exp]	14.1	0.8857
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	17.0	0.8879
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	19.9	0.8776
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	27.5	0.8867
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019669 [exp]	34.4	0.8190
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10039310 [exp]	39.2	0.8188
AT1G70505			unknown protein		Lus10030895 [exp]	40.4	0.8710
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10025523 [exp]	47.3	0.8203
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	51.6	0.8612
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	54.5	0.8639

Compare expression of checked genes

Lus10041355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.