Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44160 301 / 2e-92 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G03840 301 / 8e-92 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 295 / 1e-89 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 293 / 1e-89 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT2G02080 290 / 2e-87 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G55110 286 / 7e-87 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G14580 286 / 8e-87 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT5G03150 287 / 9e-87 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G45260 285 / 1e-86 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G02070 284 / 2e-84 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036573 [exp] 421 / 4e-137 AT1G03840 292 / 2e-93 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10010820 [exp] 300 / 3e-94 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 303 / 4e-92 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 291 / 2e-88 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 291 / 3e-88 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 290 / 7e-88 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 288 / 1e-87 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10041723 [exp] 290 / 2e-87 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10008396 [exp] 290 / 3e-87 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208444 [exp] 398 / 1e-127 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.013G019200 [exp] 350 / 2e-110 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 339 / 7e-106 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 309 / 4e-95 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 307 / 2e-94 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 306 / 8e-94 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 306 / 2e-93 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.016G088500 [exp] 301 / 5e-92 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 302 / 7e-92 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.002G263600 [exp] 298 / 6e-91 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041356 pacid=23179549 polypeptide=Lus10041356 locus=Lus10041356.g ID=Lus10041356.BGIv1.0 annot-version=v1.0 ATGTCAAACCTGTCAGGTGAAGAAGGCAGCTTCTCCTCCGGAGATGAAGTCCACCATCTCGATAAGCAAGTGCTCCTCAATCACTTTCCGGCCGCGGCAC CCAACTCTGCCGCCGCGGCCAATAGCGACGGCTGCGGCCAGCCGCCGGCAAAGAAGAAGCGCAATTTACCAGGCACTCCAGATCCAAGCGCGGAGGTGAT GGCGCTGTCACCGACAACATTGATGGCGACGAACCGATTCGTGTGCGAGATATGCAACAAAGGGTTCCAGAGGGATCAGAACCTCCAGCTGCACAGAAGA GGGCACAACCTTCCGTGGAAATTGAAGCAAAGGACGACGACTGAGGTGAGGAAGCGGGTGTACATATGCCCAGAACCCACGTGTGTCCACCACAATCCGG CCCGAGCATTGGGGGACTTGACTGGGATCAAGAAGCATTTCAGCCGTAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAGTATGCTGT TCAGTCCGATTGGAAAGCTCATCAGAAGACTTGTGGTACTAGGGAGTACAAGTGTGACTGTGGTACCATTTTCTCCAGGAGGGACAGTTTCATAACACAC AGAGCATTCTGCGACGCCTTGGCAGAAGAGAACAACAAAGTAAACCAACAAGGCCTTATGTCCAACAACAACAACAACAACCAAATGGCAGACTTAATGT CACCAAACTCATCCTCCGCCGCCGGCGACTTCAACTCCAGCTTCGACCCTAAAAACCCTCTCAAATCCCTCCCTCAAGACCTTATTCCCATGCCTTTCAA GCCCATGAACATGGGCGCCGCTGGAGGCATGTTCTCCACTTCCTCCGGAACCCCCGCCGCGGCCAATAGCGACGGCTGCGGCCAGCCGCCGGCAAAGAAG AAGCGCAATTTACCAGGCACTCCAGATCCAAGCGCGGAGGTGATGGCGCTGTCACCGACAACATTGATGGCGACGAACCGATTCGTGTGCGAGATATGCA ACAAAGGGTTCCAGAGGGATCAGAACCTCCAGCTGCACAGAAGAGGGCACAACCTTCCGTGGAAATTGAAGCAAAGGACGACGACTGAGGTGAGGAAGCG GGTGTACATATGCCCAGAACCCACGTGTGTCCACCACAATCCGGCCCGAGCATTGGGGGACTTGACTGGGATCAAGAAGCATTTCAGCCGTAAACACGGG GAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAGTATGCTGTTCAGTCCGATTGGAAAGCTCATCAGAAGACTTGTGGTACTAGGGAGTACAAGTGTG ACTGTGGTACCATTTTCTCCAGGGTGTTCGACCAACCTGGTTCTGTTATTGAGTGGCGGTCAATGACAATAGCGGAATCATTACGGAGGGACAGTTTCAT AACACACAGAGCATTCTGCGACGCCTTGGCAGAAGAGAACAACAAAGTAAACCAACAAGGCCTTATGTCCAACAACAACAACAACAACCAAATGGCAGAC TTAATGTCACCAAACTCATCCTCCGCCGCCGGCGACTTCAACTCCAGCTTCGACCCTAAAAACCCTCTCAAATCCCTCCCTCAAGACCTTATTCCCATGC CTTTCAAGCCCATGAACATGGGCGCCGCTGGAGGCATGTTCTCCACTTCCTCCGGAACCCTTTTCGGTGGGCCCCGCGGTGGTGGTAACGGCGGCATGCC AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAGCTGTCTGTGTGGGCCCCGGGGGGGGGGGGCGCCGGGGGCC GCCGCCCCCCCACTACCTCCTCCGCCAGCCTCCAGCTCAGCTCCAACGCCGGCGCTTCCTCAGGGTTCAGCGCTTACCTCCAAGACGGCAAAGGTGGAAA CTCGGCCGCCGCGCAGATGGCCGGCTCGGCTCACATGTCGGCGACGGCGCTTTTACAGAAAGCCGCCCAGATGGGGGCCACCGCCAGCAACAGCATTAAC TCTCCGATGATGCACAAGAGCTTCTCCAGCAGCATCGGCGGAGGTGGGGCATCCGGCTCCCCGACCGGGTTCGGAAACTCAATGCAGAAGACACAGCAGG AGATGTCGCAGATGTTCGACGCGGCCGCAGCTGGCGGCGGGGTGAGCTCGCCGATGATGAACGACATGGGGATGTTCGCCAGCATGTTTATGGCCGGCGG GGATGACCAGGACGGTGTCGGTGGTGGTTTCGGTAGAGGCAACAATGGCGGCAGCGGAGGTAGTAATGGTGGAATGATGGAACGCAGTGGAGGCGGCGGC GGTGGTGGGGGGTCGAGGTTTGGGAATGAAGCGGCGGCCGCTGCCGCGGCAGAGCACGTGATGACACGTGACTTTATGGGGATAGGAGGGGCGAGGCAGC CGGGGAACATGCAAGAGAGGTTTGAGATGGAAGCTGCGTTGACTTTGAGTCAACAACAACAACAACAGCAGCAGCAGCAGCAACAGAGAATGGTTGGCGG CGGGATGATGAATCATTATCAGCAGCAGCAGCCGGCACTGTTGCTTTGGGGATGGGCTGGGGGGGTGGGGGGGGGGGCGTTGTTGGGATTGTCGCTCTCC GTTCGGGTCGATTTGGAGATCTTGCCGGTGTTTGCGGGGTTTGTGTTACGCATGGCTAGGGTGGGCGACAGGTTGGTCGAGGCAGGTTGGAGAGGATGGG AGGTAGGGTGTTGTGGTGTGTTGATCTTCACCCTGACTTGTTCCATCCGATTTGCGTCAGCTAGGGTTTTAAGAAATATAACGATGCATGGAAGATGGTG A
AA sequence Show only first row Show all	>Lus10041356 pacid=23179549 polypeptide=Lus10041356 locus=Lus10041356.g ID=Lus10041356.BGIv1.0 annot-version=v1.0 MSNLSGEEGSFSSGDEVHHLDKQVLLNHFPAAAPNSAAAANSDGCGQPPAKKKRNLPGTPDPSAEVMALSPTTLMATNRFVCEICNKGFQRDQNLQLHRR GHNLPWKLKQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITH RAFCDALAEENNKVNQQGLMSNNNNNNQMADLMSPNSSSAAGDFNSSFDPKNPLKSLPQDLIPMPFKPMNMGAAGGMFSTSSGTPAAANSDGCGQPPAKK KRNLPGTPDPSAEVMALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHG EKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRVFDQPGSVIEWRSMTIAESLRRDSFITHRAFCDALAEENNKVNQQGLMSNNNNNNQMAD LMSPNSSSAAGDFNSSFDPKNPLKSLPQDLIPMPFKPMNMGAAGGMFSTSSGTLFGGPRGGGNGGMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXAELSVWAPGGGGAGGRRPPTTSSASLQLSSNAGASSGFSAYLQDGKGGNSAAAQMAGSAHMSATALLQKAAQMGATASNSIN SPMMHKSFSSSIGGGGASGSPTGFGNSMQKTQQEMSQMFDAAAAGGGVSSPMMNDMGMFASMFMAGGDDQDGVGGGFGRGNNGGSGGSNGGMMERSGGGG GGGGSRFGNEAAAAAAAEHVMTRDFMGIGGARQPGNMQERFEMEAALTLSQQQQQQQQQQQQRMVGGGMMNHYQQQQPALLLWGWAGGVGGGALLGLSLS VRVDLEILPVFAGFVLRMARVGDRLVEAGWRGWEVGCCGVLIFTLTCSIRFASARVLRNITMHGRW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10041356 [exp]	0	1

Compare expression of checked genes

Lus10041356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.