Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000805 [exp] 42 / 4e-05 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1) Lus10027494 [exp] 37 / 0.0008 ND 34 / 0.006
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041357 pacid=23179763 polypeptide=Lus10041357 locus=Lus10041357.g ID=Lus10041357.BGIv1.0 annot-version=v1.0 ATGTCATATTCTCGGTTACCAAGCTCAAACCCTTCATCGCCAGCTTTCTCCCTTGATAGGAGAGCTCACGGCTCTTCTTTCAGCTATGGATCGTGCTCGG AGGAACACAACTCTCTCATATTCCTTTTGAAACCGACAGCCACAACTTGTAATGCAATCCTTAATTATGCCGACGACGTTTCGGAGAAAGGAAGCATCGC TCGTCTTTGTTCTCAATTTCTTGCTTATAATCTCAGTTGTGATGTGATTTTTGTTAGGAGAGTCAGTAATCGAGCAACCCACGAGCTCGCTCGTCGCTTG CATTTCTTAGCTTTATATGTTTTGGGAGTCGCTGCTCCTAATTGTCAATCAGAGTCGAAGATTATAAACCAGCCTAATCGGTCAACAAATCAAAACAAGA ATCAAGTGCGATGCAGGCCCCAAACAGGAACGCCAGTCACCACTCCGCCGCCACCGCAACCGTCACCATCACGCGCCACCGGCATTCCCCACGACGACGA CGTCATCGTCTTCCAAGAAGGAGTAGAAGAAGCAGCAGCATAA
AA sequence Show only first row Show all	>Lus10041357 pacid=23179763 polypeptide=Lus10041357 locus=Lus10041357.g ID=Lus10041357.BGIv1.0 annot-version=v1.0 MSYSRLPSSNPSSPAFSLDRRAHGSSFSYGSCSEEHNSLIFLLKPTATTCNAILNYADDVSEKGSIARLCSQFLAYNLSCDVIFVRRVSNRATHELARRL HFLALYVLGVAAPNCQSESKIINQPNRSTNQNKNQVRCRPQTGTPVTTPPPPQPSPSRATGIPHDDDVIVFQEGVEEAAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041357 [exp]	0	1
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	1.7	0.8833
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	5.7	0.8652
					Lus10013266 [exp]	6.3	0.7927
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	10.3	0.8703
AT2G15220			Plant basic secretory protein ...		Lus10013866 [exp]	13.7	0.7678
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	17.2	0.8579
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	17.5	0.8409
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	19.4	0.8572
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	21.4	0.8531
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Lus10026546 [exp]	21.6	0.8460

Compare expression of checked genes

Lus10041357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.