Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45770 560 / 0 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT5G03940 151 / 9e-41 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G15310 119 / 9e-30 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT1G48900 116 / 8e-29 Signal recognition particle, SRP54 subunit protein (.1.2) AT5G49500 108 / 7e-26 Signal recognition particle, SRP54 subunit protein (.1) AT4G30600 89 / 3e-19 signal recognition particle receptor alpha subunit family protein (.1) AT1G44170 42 / 0.0008 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036570 [exp] 630 / 0 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10003676 [exp] 336 / 1e-115 AT2G45770 273 / 4e-91 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10021346 [exp] 150 / 2e-40 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10017023 [exp] 149 / 6e-40 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10029330 [exp] 124 / 2e-31 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10016213 [exp] 124 / 3e-31 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10017891 [exp] 89 / 8e-19 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 87 / 3e-18 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078800 [exp] 584 / 0 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.002G155400 [exp] 216 / 9e-70 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.006G211500 [exp] 145 / 1e-38 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.016G078600 [exp] 144 / 3e-38 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.001G253500 [exp] 117 / 5e-29 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 115 / 3e-28 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.006G183600 [exp] 84 / 2e-17 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.018G105900 [exp] 82 / 1e-16 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.009G047902 [exp] 62 / 1e-10 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain CL0023 [flax] [poplar] PF02881 [flax] [poplar] SRP54_N SRP54-type protein, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10041358 pacid=23179704 polypeptide=Lus10041358 locus=Lus10041358.g ID=Lus10041358.BGIv1.0 annot-version=v1.0 ATGGCTACACCTCCAGCTCAGGCTCATCCGTCGCTCCTTCTTTCGAACCCTGCGCCGAAGCCGCAACTCTTCTTCACTATCCGGAGACAGACTGTCTCCG TTCACGGCAGAGCAAGAACGACTAGGTTCAAATGCTCGGCGGCAACGGGGACGGGGTTCTTCAGCCGGCTGGGGCGATTGATAAAAGAGAAGGCGAAAAG CGACGTGGAGAAGATCGTCTCCGGATTCTCCAAAACTAGGGACAATCTCGCTGTCATCGACGAACTCCTCCTCTACTGGAACCTCTCCGAGACTGACCGA GTCCTCGACGAGCTCGAGGAGATTCTTCTGGTGGCTGACTTTGGGCCGAAGATCACTATCAAGATTGTGGAGAGTTTGCGGGAGGATATACTGGCGGGGA AGCTCAAATCAGGGACTGAAATCAAGGAAGCTCTGAAGAGTCGTGTGCTGGATTTGTTAGTCAAGAAGGGGAGCAAGACTGAGCTTCAACTTGGATTCAG GAAACCGGCTGTGATTATGATGGTTGGTGTTAATGGAGGTGGGAAAACCACATCTCTTGGTAAGCTAGCATATAGACTGAAGAATGAAGGAGCGAAGATA TTGATGGCAGCAGGTGATACATTCAGGGCAGCTGCTAGTGATCAGTTGGAGATATGGGCTGAAAGGACCGGATGGGAAATTGTTGTGGCTGAAGAAGAGA AGGCAAAAGCCGCATCAGTTCTTTCACGAGCTGTAAAACGAGGAAAGGAGCAGGGCTTTGATATTGTTCTGTGCGACACTTCTGGACGACTCCACACTAA TTATAGCCTCATGGAAGAGTTGGTAGCATGTAAAAAAGCCGTGGGCAAAGTAGTTCCTGGTGCACCAAATGAGATATTGCTAGTGCTTGATGGAAACACG GGTCTCAATATGCTTCCTCAAGCAAGAGAATTCAACGAAGTAATTGGGATAACAGGTTTCGTTTTGACGAAACTCGATGGCTCTGCACGGGGCGGATGCG TGGTCAGTGTAGTAGATGAGCTTGGTATCCCAGTGAAGTTCGTGGGCGTCGGGGAAGGTGTAGAAGACCTTCAACCTTTTGATGCGGAGGATTTTGTGAA TGCCATATTTTCTTGA
AA sequence Show only first row Show all	>Lus10041358 pacid=23179704 polypeptide=Lus10041358 locus=Lus10041358.g ID=Lus10041358.BGIv1.0 annot-version=v1.0 MATPPAQAHPSLLLSNPAPKPQLFFTIRRQTVSVHGRARTTRFKCSAATGTGFFSRLGRLIKEKAKSDVEKIVSGFSKTRDNLAVIDELLLYWNLSETDR VLDELEEILLVADFGPKITIKIVESLREDILAGKLKSGTEIKEALKSRVLDLLVKKGSKTELQLGFRKPAVIMMVGVNGGGKTTSLGKLAYRLKNEGAKI LMAAGDTFRAAASDQLEIWAERTGWEIVVAEEEKAKAASVLSRAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVPGAPNEILLVLDGNT GLNMLPQAREFNEVIGITGFVLTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEDFVNAIFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10041358 [exp]	0	1
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	8.3	0.8910
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	14.2	0.8872
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	14.6	0.8658
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031131 [exp]	21.4	0.8596
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	24.2	0.8678
AT3G25410			Sodium Bile acid symporter fam...		Lus10025862 [exp]	25.0	0.8619
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	33.7	0.8519
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	35.3	0.8621
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	41.8	0.8607
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	42.4	0.8344

Compare expression of checked genes

Lus10041358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.