Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61180 321 / 9e-108 RING/U-box superfamily protein (.1) AT4G11680 311 / 1e-103 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 308 / 4e-103 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G63170 295 / 1e-97 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G68070 251 / 9e-81 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 239 / 4e-76 RIE1 RING-finger protein for embryogenesis (.1) AT1G80400 133 / 3e-35 RING/U-box superfamily protein (.1) AT4G32600 117 / 5e-29 RING/U-box superfamily protein (.1) AT4G26580 114 / 1e-28 RING/U-box superfamily protein (.1.2) AT5G55970 111 / 1e-27 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036569 [exp] 496 / 1e-176 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10006313 [exp] 288 / 9e-95 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10021801 [exp] 243 / 6e-77 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 239 / 3e-76 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10034587 [exp] 245 / 5e-76 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10012427 [exp] 145 / 1e-42 AT3G61180 125 / 5e-36 RING/U-box superfamily protein (.1) Lus10011475 [exp] 126 / 2e-32 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10013144 [exp] 125 / 3e-32 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 114 / 2e-28 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075000 [exp] 314 / 4e-105 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 310 / 1e-103 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 308 / 2e-102 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.008G134900 [exp] 264 / 9e-86 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 245 / 2e-78 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.006G247000 [exp] 129 / 2e-33 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 127 / 9e-33 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 117 / 1e-29 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 107 / 4e-26 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.009G034700 [exp] 69 / 6e-13 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10041359 pacid=23179789 polypeptide=Lus10041359 locus=Lus10041359.g ID=Lus10041359.BGIv1.0 annot-version=v1.0 ATGCAATCGTCAACTTCGTCCACTCTGCCTCCGTCTCCCGACGTCACATCGCCGCTCCTGACTCGCTCGATTGCTGACCGCCTGCTCCGAGGCCGGGGCC TCCTTCGCCGTCCGTCGATGCCTCTCCGCGGGCTTCTGAGGAGAGCGAGCAGCCGTGGTATGTTGCTCCGGGAGCCTTCCGTTCGGGTCCGCGAGAACGC AGCTGAGCAGCTCGAGGAGCGGCAGACCGACTGGTCCTACTCCACTCCTGTAATCCTGCTGGATGTGCTGTGGAACCTGGCGTTCGTCGGAATCGCGGCG GTTGCTCTGGTGATGAGCGCGGATGAGAAGCCCGGGGTGCCGTTGAGGCTGTGGATCGTTGGATACGGTCTTCAGTGTTTGTTTCACGTCGGGTGCGTCG TTGGCGAGTACAGGCGGCGGCGGCGGCTTCCCGGAAGGAGGTTAGGGTTAGTGGATAGTGATGGTTTGAGCTCCGGATCTGAGAACGATGATGCTGATTC CGTGGGTTACCAGACTCGTGATGCTGAAAATCATGATGAACAGAGTGTCACGAAGCAGCTAGAATCTGCAAATACGATGTTTTCACTCATCTGGTGGCTC GTTTGGTTCTATTGGATCACTGATGCAGGGCAGAATCCGATGCACGATTCCCCTTTGCTGTACTGGCTTTGTGTTGCATTCCTTGCTTTTGATGTGATCT TGGTTATTATCTGCGTTGCTATTGCTTGTCTCATTGGCGTTGCTATCTGCTGCTGTCTTCCTTGTATCATTGCCGTCTTGTATGCCATAACAGACCAGGA AGGAGCAACAAAGGAAGAGATTGATCAATTGCCGAAATTCAAGTTTCGCAGGGTACAAGATGTAAAATTCTCTGATGAGGAGAGTCAAGCACCAGCTGTT GAGTTCATGTCTAAATACAATGATTCGCTTATCGAGCGTTGTCTCCCTGAAGAGGATGCAGAATGCTGCATTTGCCTCTCTGCCTATGATGATGGAACCG AAGTCCGCGAACTTCCATGTCGGCACCATTTCCACTGTACTTGTATAGACAAGTGGCTCTACATCAACGCCACATGTCCGCTCTGCAAGTTTAACATATC CAAGGCAGGCAACCTGCAGGGCTCAAGCCAACAAGTGTAA
AA sequence Show only first row Show all	>Lus10041359 pacid=23179789 polypeptide=Lus10041359 locus=Lus10041359.g ID=Lus10041359.BGIv1.0 annot-version=v1.0 MQSSTSSTLPPSPDVTSPLLTRSIADRLLRGRGLLRRPSMPLRGLLRRASSRGMLLREPSVRVRENAAEQLEERQTDWSYSTPVILLDVLWNLAFVGIAA VALVMSADEKPGVPLRLWIVGYGLQCLFHVGCVVGEYRRRRRLPGRRLGLVDSDGLSSGSENDDADSVGYQTRDAENHDEQSVTKQLESANTMFSLIWWL VWFYWITDAGQNPMHDSPLLYWLCVAFLAFDVILVIICVAIACLIGVAICCCLPCIIAVLYAITDQEGATKEEIDQLPKFKFRRVQDVKFSDEESQAPAV EFMSKYNDSLIERCLPEEDAECCICLSAYDDGTEVRELPCRHHFHCTCIDKWLYINATCPLCKFNISKAGNLQGSSQQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	0	1
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	3.5	0.8808
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	4.6	0.8861
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	7.3	0.8786
AT3G09030			BTB/POZ domain-containing prot...		Lus10004834 [exp]	7.7	0.8256
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10004623 [exp]	8.4	0.8590
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	9.9	0.8806
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	10.7	0.8850
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	10.8	0.8836
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	11.3	0.8834
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	11.4	0.8346

Compare expression of checked genes

Lus10041359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.