Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 218 / 3e-67 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 216 / 2e-66 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G05230 184 / 4e-55 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G04890 181 / 6e-54 HD PDF2 protodermal factor 2 (.1) AT5G52170 178 / 4e-53 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G21750 173 / 6e-51 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G17920 145 / 6e-41 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 137 / 3e-38 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT2G32370 121 / 2e-32 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G79840 118 / 2e-31 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036567 [exp] 238 / 9e-75 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018359 [exp] 175 / 5e-53 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 177 / 8e-53 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 175 / 9e-52 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 174 / 3e-51 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10007650 [exp] 170 / 5e-50 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 169 / 3e-49 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031892 [exp] 155 / 7e-45 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10031321 [exp] 155 / 2e-44 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 262 / 7e-84 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 259 / 1e-82 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 192 / 3e-58 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G152000 [exp] 191 / 2e-57 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 189 / 1e-56 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 187 / 3e-56 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 169 / 1e-49 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 164 / 6e-48 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G141800 [exp] 159 / 1e-45 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.003G052400 [exp] 150 / 7e-43 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041361 pacid=23179750 polypeptide=Lus10041361 locus=Lus10041361.g ID=Lus10041361.BGIv1.0 annot-version=v1.0 ATGCAGGAGATGGCCCACATTGCCAAGGGCCAAGATCACGGCAACTGCGTCTCCCTCCTACGCGCCAGCGCGATGAACGCGAACCAGAGCAGCATGCTAA TACTGCAGGAGACATGCGTAGACGCTGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCAATGCACGTTGTGATGAACGGAGGGGATTCAGC TTACGTGGCTCTCCTTCCTTCAGGGTTCGCTATCGTACCCGATGGTCCAGGGCGGAGGTCCATGGGATCGACGGAGGATGACGTCAACAACGATAATAAT GGAGGGGGGCAGACGAGGGCGGGAGCAAGTGGGTCGCTGCTGACGGTGGCGTTTCAGATACTGGTGAATAGCCTGCCGACGGCGAAGCTGACGGTGGAGT CGGTGGAGACTGTGAACAACTTGATTTCATGCACCGTCCAGAAGATCAAAGCGGCACTTCAATGCGAGAGCTGA
AA sequence Show only first row Show all	>Lus10041361 pacid=23179750 polypeptide=Lus10041361 locus=Lus10041361.g ID=Lus10041361.BGIv1.0 annot-version=v1.0 MQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCVDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGRRSMGSTEDDVNNDNN GGGQTRAGASGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10041361 [exp]	0	1
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10011003 [exp]	2.0	0.8996
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	5.5	0.8968
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	9.5	0.8953
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	10.0	0.8839
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	13.0	0.8554
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	13.9	0.8946
					Lus10027092 [exp]	16.4	0.7502
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	17.3	0.8404
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	18.3	0.8767
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	20.1	0.8750

Compare expression of checked genes

Lus10041361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.