Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 376 / 1e-121 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 366 / 4e-119 HD HDG7 homeodomain GLABROUS 7 (.1) AT3G61150 365 / 3e-117 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 272 / 2e-82 HD PDF2 protodermal factor 2 (.1) AT4G21750 271 / 5e-82 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 264 / 1e-79 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G79840 233 / 8e-68 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G25530 231 / 2e-67 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT2G32370 211 / 6e-60 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G73360 202 / 9e-57 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036567 [exp] 452 / 4e-151 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10005758 [exp] 408 / 3e-136 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10031892 [exp] 383 / 3e-126 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10027175 [exp] 272 / 8e-82 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10005759 [exp] 271 / 8e-82 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 270 / 1e-81 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10039667 [exp] 271 / 2e-81 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10020059 [exp] 266 / 1e-80 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 265 / 1e-79 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 446 / 2e-148 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 444 / 9e-148 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 319 / 3e-100 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 306 / 4e-95 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 276 / 7e-84 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 272 / 2e-82 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 271 / 4e-82 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 263 / 2e-79 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.001G184100 [exp] 263 / 8e-79 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.003G052400 [exp] 258 / 5e-77 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10041362 pacid=23179656 polypeptide=Lus10041362 locus=Lus10041362.g ID=Lus10041362.BGIv1.0 annot-version=v1.0 ATGAGTTTTGGATTCCTTGAAAACGGTAGCCCAGGTGGCGGAAGATTCATAGCTGACTATACTACCGCAACCACCATGTCCACCTCCGGCGGGGGAATGG TTCAGCCTCGTCTCCTATCTCCGAATTCCTTCTCCAAGTCCATGTTCAGCTCCCCTGGACTCTCCCTCGCTCTCGTACGGCCGCAGCAACCGAATATGGA TGGAGGAAGACAAGGGGAATTTGGGAGGATGACTGAGAACTATGAGACAAGTGTGGGGAGGATTAGAAGTAGGGAAGAGGAGCACGATAGCAGATCTGGG AGTGATAACTTAGATGGGGCTTCTGGTGACGAGCAGGATGCTGCTGATAAGCCTCCCAGGAAGAAGAGATACCACCGACACACTCCTCAGCAAATCCAAG AGCTTGAAGCGCTTTTCAAAGAGTGTCCTCATCCTGATGAGAAGCAGAGATTGGAGCTCAGCAAAAGACTTTGCCTGGAAACCAGGCAGGTGAAGTTCTG GTTCCAGAATCGACGAACCCAGATGAAGACTCAACTTGAACGCCATGAGAACACACTACTCCGGCAAGAAAACGACAAGCTTCGAGCCGAAAACATGTCA ATTAGAGATGCTATGAGGAACCCAATGTGCTCCAACTGTGGTGGTCCTGCTATAATTGGTGACATCTCACTTGAAGAACAGCATCTGAGGATCGAGAATG CAAGACTGAAAGACGAGCTTGACCGAGTTTGTGGTCGGTTTGAACCCCATTGGAATCGGTGGGCAGAAATGTTTCCCTGTATGATTGCCAGAACATCTAC TACTGATGTCATATCTAACGGGATGGGGGGAACTCGAAATGGCTCACTTCAGTTGATGCACGCTGAGCTCCAAGTTCTATCTCCTTTGGTCCCGGTTCGT GAGGTAAATTTCCTGCGATTCTGTAAGCAGCACGCAGAAGGGGTGTGGGCAGTCGTTGATGTGTCCGTAGACGCCATTCGAGAAGTTTCGGGCGGCCCAC CTATATTTCTCAGCTGCAGGAGGCTTCCTTCTGGCTGTGTGGTGCAAGATATGCCTAATGGCTACTCTAAGGTAACAGCAAAAAAAAAGAGTTTGCTTTT GCTTAGCTGCATTTTGGTCCCTTCGAGGAGGGTTGCTTCTGGCTGTGTGGTGCAAGATATGCCTAATGGCTACTCCAAGGTGACGTGGGTGGAACACGGA GAATATGAGGAAAGCCAAATCCATCAGCTTTACCGGCCGTTAATCCAATCTGGAATGGGGTTCGGTGCCCAAAGATGGGTAGCCACCCTTCAACGCCAGT GCGAGTGTCTAGCCATTCTCATGTCATCGACTGTTCCTGCTAGAGACCACACCGCTGCGATAACTGCGAGCGGGCGGCGGAGCATGCTGAAGCTGGCACA AAGAATGACCGACAACTTCTGCGCCGGGGTGTGTGCGTCGACGGTGCACAAGTGGAACAAGCTCAACGGCGGGAACGTGGAAGAGGACGTTCGGGTGATG ACGAGGAAAAGCGTCGACGATCCAGGGGAGCCTCCTGGTATCGTCCTTAGCGCGGCCACCTCGGTTTGGCTGCCGGTGTCACCCTCGCCCCGCCGCCTCG GTTGGGCTACCGGTTGCACCCCAGCGCCTGTTTGA
AA sequence Show only first row Show all	>Lus10041362 pacid=23179656 polypeptide=Lus10041362 locus=Lus10041362.g ID=Lus10041362.BGIv1.0 annot-version=v1.0 MSFGFLENGSPGGGRFIADYTTATTMSTSGGGMVQPRLLSPNSFSKSMFSSPGLSLALVRPQQPNMDGGRQGEFGRMTENYETSVGRIRSREEEHDSRSG SDNLDGASGDEQDAADKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMS IRDAMRNPMCSNCGGPAIIGDISLEEQHLRIENARLKDELDRVCGRFEPHWNRWAEMFPCMIARTSTTDVISNGMGGTRNGSLQLMHAELQVLSPLVPVR EVNFLRFCKQHAEGVWAVVDVSVDAIREVSGGPPIFLSCRRLPSGCVVQDMPNGYSKVTAKKKSLLLLSCILVPSRRVASGCVVQDMPNGYSKVTWVEHG EYEESQIHQLYRPLIQSGMGFGAQRWVATLQRQCECLAILMSSTVPARDHTAAITASGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNGGNVEEDVRVM TRKSVDDPGEPPGIVLSAATSVWLPVSPSPRRLGWATGCTPAPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10036567 [exp]	1.0	0.9382
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	1.4	0.9332
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	3.9	0.8879
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	4.2	0.8662
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	5.3	0.8828
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	11.4	0.8799
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	11.5	0.8711
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	12.2	0.8431
AT5G16030			unknown protein		Lus10033537 [exp]	13.6	0.8685
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	14.5	0.8706

Compare expression of checked genes

Lus10041362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.