Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00740 806 / 0 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 410 / 2e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 405 / 1e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 394 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 393 / 7e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 390 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 380 / 4e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 379 / 8e-125 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G26850 377 / 7e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G43200 356 / 9e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000808 [exp] 906 / 0 AT4G00740 985 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018848 [exp] 664 / 0 AT4G00740 751 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 396 / 7e-131 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034729 [exp] 384 / 1e-126 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 380 / 4e-125 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 378 / 6e-124 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 378 / 7e-124 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 377 / 7e-124 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 373 / 6e-122 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075300 [exp] 801 / 0 AT4G00740 965 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 405 / 1e-134 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 395 / 3e-130 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 394 / 3e-130 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 393 / 6e-130 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 392 / 2e-129 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 390 / 8e-129 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G131400 [exp] 384 / 1e-126 AT1G31850 1026 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G146400 [exp] 378 / 3e-124 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G102400 [exp] 377 / 3e-124 AT1G31850 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041363 pacid=23179561 polypeptide=Lus10041363 locus=Lus10041363.g ID=Lus10041363.BGIv1.0 annot-version=v1.0 ATGGGGCTTCTGAACCTCCCATCCAAACGGAACTCTAAGCAATGGAAGCTGCTCGATCTCATCTCCGCAGCATTCTTCTGTTTAGTCATTCTCTTCCTTT ACTTAGTCTTCACCCATTCAGGCGACTCCATCGCCGCCTCCGGCAGAAAGTCTCTTCTTCGATCTAAATCCGATCCTAGGCACCGCCACCGCCTCGTCCT GCTCTTGGAGACGGCCACGGACCCTCACCCGATTGATGCCTGTTCCGCCGAGGAAGTCGATCATATGCCCTGCGAGGATCCCAGGCGGAATAGTCAGCTC AGCAGAGAGATGAATTTCTACAGGGAGCGTCACTGTCCTGTTTTAGACGAGACTCCTCTTTGCTTGATCCCTCCCCCTAATGGTTACAGAGTCCCCGTTC AGTGGCCTGATAGTTTGCACAAGATATGGCATGCAAACATGCCTCACAACAAACTTGCTGAGAGGAAAGGGCACCAGGGATGGATGAAAAGGGACGGGGA ATACTTTATCTTCCCCGGTGGTGGCACAATGTTCCCTGAAGGTGCCATCCCTTATATAGAGAAACTTGCAAGATATATCCCTCTACGAGATGGAGGTTTA AGGACTGCTCTTGATATGGGATGTGGGGTTGCTAGTTTTGGAGGATATCTAATGAAGGAAGGAATTCTACCACTCTCTTTTGCTCCAAGAGATTCACACA AATCTCAGATACAGTTTGCGCTGGAGCGAGGGATTCCGGCATTTGTTGCTATGCTTGGCACTCGGAGGCTCCCGTTTCCTGCATTCTCATTTGACTTGAT TTGGCTTGCAGATGCAACTTATTTCATTGAAGTGGATCGTTTGCTCCGCCCAGGAGGATATTTAGTCATATCTGGTCCTCCAGTGAGGTGGGCAAAACAA GATAAGGAATGGTCAGACCTTCAAGGTGTGGCAAGAGCACTTTGCTATGAGTTAATTATTGTTGATGGCAACACTGCTATTTGGAAAAAGCCTTCTCAAG AATCGTGCCTGACTAGTGAAAATGAATTTGGCCTTCACTTGTGTGATGAATCAGTTGATTCAACCTCCGCATGCTCAGACCGGTTTGGCTGCGGCAGGTA CTTTAAGCTAGAGAAATGTGTGACCCCTCAATCTTCAATGACGGGGAAATCTGCCGTAGGGATGATTCCGGCTTGGCCAGCTAGATTAAACAGACAACCA GCAAGGGCTTCCCTCATGAACAGTGGAAATGATCTATTTGAGTCTGACACTCGTCGTTGGGCTAGGAGGGTTGCCTATTACAAGAGCTCTTTAAACGTGA AGCTGGGAACTCCTTCCATACGCAATGTCGTGGATATGAGTGCATTTTTCGGTAGCTTTGCTGCAGCTTTAGCATCTGATCCAGTGTGGGTGATGAATGT TGTTCCTGCTCACAAGCCATCAACTTTGGATGTAATCTATGATAGGGGTCTTATTGGCGTTTACCATGATTGGTGTAGCCTTGTGGATGTACTAGTCGAG ATGGACAGAATACTGCGTCCAGAAGGAACAGTGGTGATACGCGACTCATCGGAGGTGATCGAGAAAGTCGCGCGCTTAGCAAATGCTGTAAGATGGACCG GTACCATACACGAGACAGAAGAAGAATCTCATGGGGCAGAGAAGATACTGGTTGCCACCAAGAACTTATGGAGATTAGCAGCATCTCACTGA
AA sequence Show only first row Show all	>Lus10041363 pacid=23179561 polypeptide=Lus10041363 locus=Lus10041363.g ID=Lus10041363.BGIv1.0 annot-version=v1.0 MGLLNLPSKRNSKQWKLLDLISAAFFCLVILFLYLVFTHSGDSIAASGRKSLLRSKSDPRHRHRLVLLLETATDPHPIDACSAEEVDHMPCEDPRRNSQL SREMNFYRERHCPVLDETPLCLIPPPNGYRVPVQWPDSLHKIWHANMPHNKLAERKGHQGWMKRDGEYFIFPGGGTMFPEGAIPYIEKLARYIPLRDGGL RTALDMGCGVASFGGYLMKEGILPLSFAPRDSHKSQIQFALERGIPAFVAMLGTRRLPFPAFSFDLIWLADATYFIEVDRLLRPGGYLVISGPPVRWAKQ DKEWSDLQGVARALCYELIIVDGNTAIWKKPSQESCLTSENEFGLHLCDESVDSTSACSDRFGCGRYFKLEKCVTPQSSMTGKSAVGMIPAWPARLNRQP ARASLMNSGNDLFESDTRRWARRVAYYKSSLNVKLGTPSIRNVVDMSAFFGSFAAALASDPVWVMNVVPAHKPSTLDVIYDRGLIGVYHDWCSLVDVLVE MDRILRPEGTVVIRDSSEVIEKVARLANAVRWTGTIHETEEESHGAEKILVATKNLWRLAASH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	0	1
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	1.7	0.9112
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	2.8	0.8618
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	3.2	0.8768
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	3.5	0.8768
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	4.2	0.8791
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	7.5	0.8630
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	7.7	0.8763
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	8.5	0.8462
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	9.9	0.8788
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	10.8	0.8597

Compare expression of checked genes

Lus10041363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.