Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61140 709 / 0 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) AT3G12850 86 / 4e-18 COP9 signalosome complex-related / CSN complex-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036566 [exp] 896 / 0 AT3G61140 709 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10042184 [exp] 43 / 0.0003 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10008632 [exp] 43 / 0.0005 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10037125 [exp] 42 / 0.0009 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075500 [exp] 773 / 0 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.002G154500 [exp] 770 / 0 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.013G020300 [exp] 46 / 3e-05 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.008G042400 [exp] 44 / 0.0002 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.010G164200 [exp] 43 / 0.0003 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10602 [flax] [poplar] RPN7 26S proteasome subunit RPN7 CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10041364 pacid=23179764 polypeptide=Lus10041364 locus=Lus10041364.g ID=Lus10041364.BGIv1.0 annot-version=v1.0 ATGGAGGCGGACGACGAGATTTATGCCAATGGCGTCGACGATGCGAGCCGTAGCAGGCCGATTATTAGTGGCGAACAGCTCGATATCGAAGCCTATGCTG GGTTATACACTGGGAGGACGAAGATAACGCGCCTTATCTTCATCGCCGACCACTGCGGCAACCCTTCTATGCAAACGGAAGCGCTCAGGATGGCCTACGA CGAGATCAAGAAGGGCGAGAACACGCAGCAGTTTCGAGAAATCGTACAGAAGATCGACGGGAGGCTTGGGCCTAACTACACCATAGATAGTGGCTGGTGT GAGATGGTGGATCGTAGAGCCGAGCAAAGGAAGGAGAAGCTCGAGAATGAACTCAATGCGTACCGGACAAATCTGATAAAGGAAAGCATAAGAATGGGAT ACAACGATTTTGGGGATTTCTATTATGCCCACGGAGCACTTGGAGATGCTTTTAAGAGTTACATTCGGACTCGTGATTATTGCACAACGTCAAAGCACAT CATCCATATGTGTATGAGTGCAATTCTCGTCAGCATTGAGATGGGTCAGTTTACTCATGTTACAAGTTATGTCAGCAAAGCAGAACAGAGTGAGGGACTT GAACCTGCTACAACTGCAAAGTTGAAGTGTGCTGCTGGATTGGCACATCTAGAGGCTAAGAAATACAAGCTTGCTGCTAGAAAGTTCTTGGAAGTGGGTC CTGAGTTAGGAAATACATACAATGAAGTTATTGCATCCCAAGATGTTGCAACATATGGTGGCCTTTGTGCACTTGCAAGTTTTGACCGTACAGAGTTAAA GAACAAGGTAATAGACAACATCAACTTCAGAAATTTCTTGGAATTAGTACCTGAAGTTAGAGAGCTCATTCATGATTTCTATTCAAGCCACTATGCTTCC TGTCTAGATTACTTGGAAAATCTGAAGACAAACCTGATGCTGGACATCCATTTGCACGATCATGTTGAGACACTATACGATCAAATTCGAAACAAGGCCC TTATTCAATACACTCACCCCTTTGTGTCTGTTGACCTGAACATGATGGCCAATGCTTTCAAAACAAGCGTTGCTGGGCTAGAGAAAGAACTTGCAGATTT GATTACTGAAAACCAAATACAGGCTCGTATAGACTCCCACAACAAGATTCTCTATGCACGGCATGCTGACCAGAGAAACTCCACCTTTCAACGGGTTCTC CAGACGGGCAGTGAATTCGACAGGGATGTTCGAGCAATGCTACTGAGAGCAAGTCTGATCAAGCATGAGCACGGTGTTAGAGCATCCAGGAAGCTATGA
AA sequence Show only first row Show all	>Lus10041364 pacid=23179764 polypeptide=Lus10041364 locus=Lus10041364.g ID=Lus10041364.BGIv1.0 annot-version=v1.0 MEADDEIYANGVDDASRSRPIISGEQLDIEAYAGLYTGRTKITRLIFIADHCGNPSMQTEALRMAYDEIKKGENTQQFREIVQKIDGRLGPNYTIDSGWC EMVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYIRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQSEGL EPATTAKLKCAAGLAHLEAKKYKLAARKFLEVGPELGNTYNEVIASQDVATYGGLCALASFDRTELKNKVIDNINFRNFLELVPEVRELIHDFYSSHYAS CLDYLENLKTNLMLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELADLITENQIQARIDSHNKILYARHADQRNSTFQRVL QTGSEFDRDVRAMLLRASLIKHEHGVRASRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10041364 [exp]	0	1
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	5.0	0.7455
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10005123 [exp]	12.0	0.6511
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	13.4	0.6740
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	17.6	0.6935
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	27.3	0.6530
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	38.9	0.6637
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	42.8	0.6575
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	46.6	0.6592
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	47.9	0.6539
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034719 [exp]	66.1	0.5675

Compare expression of checked genes

Lus10041364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.