Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00752 229 / 9e-70 UBX domain-containing protein (.1) AT4G11740 211 / 9e-62 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 147 / 8e-39 Ubiquitin-like superfamily protein (.1) AT2G43210 54 / 2e-07 Ubiquitin-like superfamily protein (.1.2) AT4G10790 47 / 3e-05 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036564 [exp] 869 / 0 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10029591 [exp] 206 / 1e-59 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 195 / 1e-55 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10027684 [exp] 61 / 6e-10 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10026718 [exp] 58 / 1e-08 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 58 / 1e-08 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10025504 [exp] 56 / 4e-08 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2) Lus10039951 [exp] 45 / 0.0001 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075600 [exp] 389 / 8e-132 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.003G122300 [exp] 223 / 3e-66 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 171 / 7e-47 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.015G080200 [exp] 70 / 1e-12 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.017G036600 [exp] 59 / 3e-09 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.007G123800 [exp] 58 / 6e-09 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.003G145200 [exp] 47 / 2e-05 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 45 / 7e-05 AT4G10790 520 / 0.0 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02809 [flax] [poplar] UIM Ubiquitin interaction motif CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10041365 pacid=23179746 polypeptide=Lus10041365 locus=Lus10041365.g ID=Lus10041365.BGIv1.0 annot-version=v1.0 ATGGCTGGGCCTACACGCGATGCGATCGAGACCTTTGTTCGAGTCACCGGGGCTTCCCATTCACTCGCCGCAAGGAGAATTGAGGAACATGGAGGCAATC TTGACGAAGCTCTGAATTCGCATTTCAGTGGGATAGAGAGCAGCACTTCAAACTCAGTACCGAGTACTTTTCCTCGGCACAATCCGCCAGATGCAAGAAA TCAAGTGCGAAATGGGTCACAGGGCATATTACCAGTTCTTTCTGCTGCGAGAAGTTTCAGACCGTCACTGTTGTTTGACCCGAATTATAGGAGGAACCTT TGGAGTCAGCTTGGTGCTTCTGTCTTCAACAGTGGTAGACCACCTCCTTCACAAACCACACCTTACAACAATGCTTTTGACCAGCCGTACCAGTCAGGAG TGAGGCCTGTCACACAGGATGTGTATCAAGCTTCCTTGCCTAATGATGTGCACCCTTACGGAAATATGCCCAGATATAACGTGCCAAATCTGGGTGATAA CAATGTAGAAGAAGAAATGGTCAAGCGTGCAATTGAAACTTCAAAACAGGAGATCGAAACCCGATCGAGAGCAGGTGTTGCACGGAGCCAGCTTCACCTA GAAGACGAGGAGCTAGCTCGTGCTGTATCATTGTCAATGAAGACAGCAGAAGAAGAGAATGTGATTCGTGAGCACATGGAAAAAGACCAGCTACCGGGAG TCCGGGATCCAAGCACAAGGGCTGGCAGCAGCGGCCTTGATAGTTGGCAGGCTGAGAGCTCAAGCTCGGGTGGAAAAGTTGACGATGAGCAATTGTGGAG TGCCATGTCTTCTGAGGAGCTTGATGAAGCTATTCTTCTTGAGACGGCAATTTTTGGTCAACGCCATGGAGAAAGCTCACTTCAACATGCCTCTGCTGTG CCAAATTATGAAGACAATAGTACAGCTGTCAACAAAAAAACTGCACCAAATCCCTTGCCCCTGGTGCAAAAGGAACGACAATCCCTTCGTCAGCAGCAGG ATAATGAGTATCTTGCTTCTCTCTTGGCTGATAAGAAGAAAGAGGCTACAGTATCAAAGAAAGCTGAACTATCTAGCCCCAATGAAGAAAGTTCTCTACA TAAAGTGCTTGATGACGTGAATCAGCTTTTCCAGGAAACCGAGAGGTTGCTTGCTGCAAAAGAAGCATTGCTTCCTGAAGAACCGCCTGTGGACGAAGAG AATGCAGTCAATATCCTTATTCGCATGCCAGATGGTTCTCGACTTGGCCGCCGGTTTCTCAAGTCCGACAAGCTGAAATATGTGTTCGACTTCATTGACA TCGGTAGAGCTGTAAAGCCCGGAACATACAGAGTAGTGAAACCGTACCCGAGGAGGGCTTTTTCTGTAGAAGACAGCGGATCGAGTTTGAGCGAAGTGGG TCTGAACAGTAAACAGGAAGCCTTGTTCATGGAGTTCATTTAG
AA sequence Show only first row Show all	>Lus10041365 pacid=23179746 polypeptide=Lus10041365 locus=Lus10041365.g ID=Lus10041365.BGIv1.0 annot-version=v1.0 MAGPTRDAIETFVRVTGASHSLAARRIEEHGGNLDEALNSHFSGIESSTSNSVPSTFPRHNPPDARNQVRNGSQGILPVLSAARSFRPSLLFDPNYRRNL WSQLGASVFNSGRPPPSQTTPYNNAFDQPYQSGVRPVTQDVYQASLPNDVHPYGNMPRYNVPNLGDNNVEEEMVKRAIETSKQEIETRSRAGVARSQLHL EDEELARAVSLSMKTAEEENVIREHMEKDQLPGVRDPSTRAGSSGLDSWQAESSSSGGKVDDEQLWSAMSSEELDEAILLETAIFGQRHGESSLQHASAV PNYEDNSTAVNKKTAPNPLPLVQKERQSLRQQQDNEYLASLLADKKKEATVSKKAELSSPNEESSLHKVLDDVNQLFQETERLLAAKEALLPEEPPVDEE NAVNILIRMPDGSRLGRRFLKSDKLKYVFDFIDIGRAVKPGTYRVVKPYPRRAFSVEDSGSSLSEVGLNSKQEALFMEFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	0	1
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Lus10006654 [exp]	2.0	0.8420
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	3.0	0.8279
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	3.9	0.8184
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	5.2	0.8500
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	5.5	0.8251
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	6.3	0.8345
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	8.1	0.8455
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	10.7	0.8414
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	12.0	0.8215
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	14.3	0.8424

Compare expression of checked genes

Lus10041365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.