Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00750 772 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 756 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 665 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 645 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 616 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 587 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 537 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 461 / 4e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 440 / 6e-148 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 413 / 2e-137 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036563 [exp] 811 / 0 AT4G00750 709 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 707 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 657 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 654 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 641 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039385 [exp] 595 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 593 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 593 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 592 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075700 [exp] 842 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 830 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 740 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 740 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 672 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 665 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 610 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 597 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 595 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 580 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041366 pacid=23179911 polypeptide=Lus10041366 locus=Lus10041366.g ID=Lus10041366.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGATTCATAATTACCACCACTTCATCGCCTCCAAATCTAAACGCCCAAACCTCATCAAAGCCTTATCCACCGTAATCCTCTGCTCGATCT TCTACATAATCGGCTTCTACCAGAACACCCGCGGCTCAATTCCAACCAAAAACGACGCCGTCGGAGACGGCGGCATCACCTGCTCCTCCGCCGCCGTCGT CCCTTCCCTCAACCGCACCCTTGACTTCTCCGCCCTGCCCTCCCCGCCCCCCCCCCGCTCCCCAGCCCCTCCACCGTACTCTGCCGTCCCCGCCATCCCA CCTTGCGACCCTGCCTACTCCGAATACACCCCATGCGAGGACGTCCACCGCTCCCTCCGGTTCGACCGGACCCGATTGATTTACAGGGAGCGCCACTGTC CCGAAACACCCGATGAGAGGCTGAGCTGCCGGGTTCCGGCGCCAAACGGATACCGTTTGCCGTTCCGGTGGCCGGAGAGCCGGCAATTCGCTTGGTACGC GAATGTCCCTCACAAGGAGCTGACCGTTGAGAAGAGGAACCAGAATTGGGTTCATTTCGAAGGCGATCGGTTCACCGGCTCCGGTGCCCCGGGGGCGGTG GCGAGTTTTGGCGCGTACCTTCTGCCGAGGGACATCGTAACGGTGTCGTTTGCACCGAGAGACACCCACGAAGCACAAGTCCAGTTTGCACTTGAGCGTG GAGTTCCAGCCTTGATTGGGATCCTAGCATCAATCAGATTGCCATACCCTTCAAGGGCATTTGACATTGCTCATTGCTCTCGTTGCCTCATCCCTTGGGG TCAATTCGATGGGCAGTACTTGCTCGAAGTCGATAGGGTGTTGAGGCCAGGGGGTTACTGGATCCTGTCAGGGCCACCAATCAACTGGCAAGGTCACTAC AAAGGGTGGAACAGAACAAGGGAAGATCTGAAAGCAGAACAAGATAGAATCGAAGGAGTTGCCAAGAGCATTTGCTGGAAGAAGCTTGTTCAGAAGAATG ACATTGCTATCTGGCAAAAACCCACTAATCACATCCATTGCAAAGCCACTCGGAAGGTGTTTCGTCAGCCGGATTTCTGCACTTCCCGCAATCCTGATCA AGCCTGGTACAGCAAAATGGAGACTTGCATAACACCACTTCCTGAAGCATCAGACATCAAGGAAACAGCAGGCGGGGAGCTAGCCAAATGGCCAGAAAGG CTGAATGCCATCCCTCCAAGAATCATGCAAGGAGGAATCAATATCACTCCAGAGAAGTTTCATCAGGATACCGAGCTATGGCAGAAAAGGGTAGCGTATT ACAAGAAGGTAGACCAGCAACTCGGCCAGACTGGCCGGTATCGGAACTTGCTCGACATGAATGCAGGTCTGGGCGGCTTTGCAGCAGCTATGGTTCAGGA CCCGGTTTGGGTCATGAATGTTGTCCCTGTTGAATCCGAAATCAATACCTTGGGAGTGATCTACGAGCGTGGATTGATCGGAACCTACCAAAACTGGTGT GAAGCCATGTCAACATATCCGAGGACTTACGACTTCATTCACGCAGATTCGATCTTCAGCCTCTACGAAAACAAATGTGAAATGGAAGACATACTGCTGG AAATGGACAGAGTACTGAGACCACAAGGGAGTGTGATAATAAGAGAGGATGTGGATGTGTTAGTGAAGGTGAAAGCCATTATAGAAGCAATGCAATGGGA AGGGATAATTGCAGACCATGAATATGGCCCCAAGTACAGAGAAAAAGTTCTCTTTGCATCTAAGAAGTACTGGACATCACCGCCACCTCTAACTTCATAG
AA sequence Show only first row Show all	>Lus10041366 pacid=23179911 polypeptide=Lus10041366 locus=Lus10041366.g ID=Lus10041366.BGIv1.0 annot-version=v1.0 MAPPIHNYHHFIASKSKRPNLIKALSTVILCSIFYIIGFYQNTRGSIPTKNDAVGDGGITCSSAAVVPSLNRTLDFSALPSPPPPRSPAPPPYSAVPAIP PCDPAYSEYTPCEDVHRSLRFDRTRLIYRERHCPETPDERLSCRVPAPNGYRLPFRWPESRQFAWYANVPHKELTVEKRNQNWVHFEGDRFTGSGAPGAV ASFGAYLLPRDIVTVSFAPRDTHEAQVQFALERGVPALIGILASIRLPYPSRAFDIAHCSRCLIPWGQFDGQYLLEVDRVLRPGGYWILSGPPINWQGHY KGWNRTREDLKAEQDRIEGVAKSICWKKLVQKNDIAIWQKPTNHIHCKATRKVFRQPDFCTSRNPDQAWYSKMETCITPLPEASDIKETAGGELAKWPER LNAIPPRIMQGGINITPEKFHQDTELWQKRVAYYKKVDQQLGQTGRYRNLLDMNAGLGGFAAAMVQDPVWVMNVVPVESEINTLGVIYERGLIGTYQNWC EAMSTYPRTYDFIHADSIFSLYENKCEMEDILLEMDRVLRPQGSVIIREDVDVLVKVKAIIEAMQWEGIIADHEYGPKYREKVLFASKKYWTSPPPLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	0	1
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	1.7	0.9226
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	2.0	0.9122
AT4G21865			unknown protein		Lus10014471 [exp]	2.2	0.9058
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	2.4	0.9089
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	2.8	0.9065
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Lus10021190 [exp]	5.3	0.8538
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	5.7	0.8834
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	5.8	0.8680
AT5G02090			unknown protein		Lus10024357 [exp]	6.0	0.8766
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	6.7	0.8711

Compare expression of checked genes

Lus10041366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.