Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00755 299 / 2e-99 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036561 [exp] 645 / 0 AT4G00755 323 / 5e-109 F-box family protein (.1.2) Lus10015001 [exp] 272 / 2e-88 AT4G00755 273 / 8e-89 F-box family protein (.1.2) Lus10038879 [exp] 184 / 9e-56 AT4G00755 142 / 9e-40 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076300 [exp] 384 / 1e-132 AT4G00755 352 / 7e-120 F-box family protein (.1.2) Potri.002G153900 [exp] 371 / 6e-128 AT4G00755 311 / 3e-104 F-box family protein (.1.2) Potri.014G076200 [exp] 106 / 7e-28 AT4G00755 95 / 6e-24 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041367 pacid=23179802 polypeptide=Lus10041367 locus=Lus10041367.g ID=Lus10041367.BGIv1.0 annot-version=v1.0 ATGGAGAACCGTTCGGATTTCTTCAATTGGCTGGACTACGATGCGTTGATGTACATTTTCATGTTCTTGGATGATCCTGCTGATCTCGTCCGCGCCAGCT CCGTCTCCAGAACTTGGCGAGATTTTGTTGTGAAGAATGGTCTCTGTAAGCTCCTTTGCATGAGAAAGTTCGCTGCTTTGCATAAACTTAAGAGTGTCAT CGAACCAAGCCGTTGTGTCAAGGATATTGCAGAAGTTGGATGCAGCGGATCTGTGGAAGATGACAATAACTTAGGGGTTGAGCACAGAGCGCTTGGATTT CTGGCTCATTCTTCCAATTCGTTTCCTTTGAGAGAATGCATAGGTGAGGCTATAAGTGCCTCTAGCACCGATAACTACCCGGACGAGAGTGTTCGCAATA CGCTGGAACCACTCGATAGGGTTGCAAGGAGGCCTTCTTATTGGTCAAGTAAAGGACAAAGTGACGATGCTGTACCCGAGAATCTTGTTTACAAGCTTGC TACTGGCATATGTGTTGTTACTGAAATCAATATAAAACCATTTCAAGCTTATTTTCAGTTGGGTTCTCCTATATACTCTGCGAAATCTGTTCGGTTCCGA TTGGGCCATTCCATTTCTCCAATGGATGATCCCATGGGCGAGCTCTGTAACAGCTGTTCTGACGAGAAAATGGAGAATCGTCTACAAAATTTTAAGCTTC CTGAACCAGTTATGTGCGTTAATGGAATGCTGATGGTTGAGCTGTTAGGCAGAACTCAGAAACAAGCAATGGATGGACTGTTCTACATATGTATATGTAA CGTGCAAGTGATTGGGCGGCCTTTATCCCCCGCATTTGGTGTCGATATCCTGGAACCCTCGGGCGGCTTCAACTTAAAGGTGCTTAGCTACGAACCCACA TTGCCAGAGCAGCCCTCACCGAACGAGTATCTACAAGGGCGAATAAGAGACTTGGAGCAGATATTGAATCTGTTACGAGATCAGGGAGTGGTCGTGGAAG ATTATGATTGGCACGGCGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGATGGTGACGAGTTTGCAGAAGAGTTTGCTCTCTGA
AA sequence Show only first row Show all	>Lus10041367 pacid=23179802 polypeptide=Lus10041367 locus=Lus10041367.g ID=Lus10041367.BGIv1.0 annot-version=v1.0 MENRSDFFNWLDYDALMYIFMFLDDPADLVRASSVSRTWRDFVVKNGLCKLLCMRKFAALHKLKSVIEPSRCVKDIAEVGCSGSVEDDNNLGVEHRALGF LAHSSNSFPLRECIGEAISASSTDNYPDESVRNTLEPLDRVARRPSYWSSKGQSDDAVPENLVYKLATGICVVTEINIKPFQAYFQLGSPIYSAKSVRFR LGHSISPMDDPMGELCNSCSDEKMENRLQNFKLPEPVMCVNGMLMVELLGRTQKQAMDGLFYICICNVQVIGRPLSPAFGVDILEPSGGFNLKVLSYEPT LPEQPSPNEYLQGRIRDLEQILNLLRDQGVVVEDYDWHGEEEEEEEEEEDGDEFAEEFAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00755			F-box family protein (.1.2)		Lus10041367 [exp]	0	1
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	8.2	0.5764
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10027814 [exp]	14.7	0.5812
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	42.3	0.5102
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014611 [exp]	51.7	0.4774
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	70.7	0.4584
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010028 [exp]	73.2	0.4435
AT1G72100			late embryogenesis abundant do...		Lus10021473 [exp]	97.0	0.4395
					Lus10034050 [exp]	111.2	0.4273
AT1G20460			unknown protein		Lus10034569 [exp]	129.7	0.4269
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001427 [exp]	155.2	0.3959

Compare expression of checked genes

Lus10041367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.