Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01820 416 / 2e-149 PEX11C peroxin 11c (.1) AT2G45740 409 / 8e-147 PEX11D peroxin 11D (.1.2.3) AT3G61070 396 / 2e-141 PEX11E peroxin 11E (.1.2.3) AT1G47750 49 / 5e-07 PEX11A peroxin 11A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036560 [exp] 480 / 1e-174 AT1G01820 416 / 2e-149 peroxin 11c (.1) Lus10003945 [exp] 52 / 7e-08 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 48 / 2e-06 AT1G47750 318 / 4e-110 peroxin 11A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076400 [exp] 422 / 7e-152 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3) Potri.002G153800 [exp] 420 / 6e-151 AT2G45740 400 / 1e-143 peroxin 11D (.1.2.3) Potri.009G133900 [exp] 211 / 1e-69 AT2G45740 206 / 3e-68 peroxin 11D (.1.2.3) Potri.014G042000 [exp] 53 / 5e-08 AT1G47750 327 / 8e-114 peroxin 11A (.1) Potri.002G134000 [exp] 50 / 3e-07 AT1G47750 332 / 8e-116 peroxin 11A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [flax] [poplar] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Lus10041368 pacid=23179992 polypeptide=Lus10041368 locus=Lus10041368.g ID=Lus10041368.BGIv1.0 annot-version=v1.0 ATGACTACTTTGGATGCAACAAGAGCCGAGCTTGCCCTGGTGGTTCTATATCTGAACAAGGCTGAGGCTAGGGACAAGATATGCAGAGCAATTCAATACG GTTCCAAGTTTGTGAGTAACGGGCAACCTGGAACTGCTCAGAATGTTGACAAATCTACCAGCTTGGCAAGGAAAGTTTTCCGTCTCTTCAAGTTTGTCAA TGATTTGCATGGGTTGATCAGCCCAGTTCCCCAAGGAACTCCGCTTCCTCTTGTTTTGTTGGGAAAGTCCAAGAATGCTTTGTTGTCGACTTTCCTGTTC CTTGATCAAATCGTCTGGCTCAGTAGGAGTGGCATTTACAAGAACAAGGAACGAGCTGAGCTACTCGGCCGCATATCTCTCTTTTGTTGGATGGGATCGT CAATCTGTACCACACTGGTTGAGGTTGGGGAGCTCGGTAGGCTGTCTGCATCGATCAAGAAGTTGGAGAAAGAGCTTAAGAACACTGACAAGCATCAAAA CGAGCACTACCGTGCTAAGCTCCAGAAGTCAAACGAAAGGTCCCTAGCTCTCGTCAAGGCAAGCATCGATATCGTGGTCGCTGTTGGACTTCTGCAGCTG GCACCGAAGAAAGTTACTCCTCGTGTAACCGGTGCCTTTGGATTTACTAGCTCTCTGATCTCCTGCTACCAGGCAATTGCTTCCATCGCGGCCAAAGGCG AAGTCAGCCTGAAGAAGGATGGATCCCTTGAATGGATGGATGTTTAG
AA sequence Show only first row Show all	>Lus10041368 pacid=23179992 polypeptide=Lus10041368 locus=Lus10041368.g ID=Lus10041368.BGIv1.0 annot-version=v1.0 MTTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFVSNGQPGTAQNVDKSTSLARKVFRLFKFVNDLHGLISPVPQGTPLPLVLLGKSKNALLSTFLF LDQIVWLSRSGIYKNKERAELLGRISLFCWMGSSICTTLVEVGELGRLSASIKKLEKELKNTDKHQNEHYRAKLQKSNERSLALVKASIDIVVAVGLLQL APKKVTPRVTGAFGFTSSLISCYQAIASIAAKGEVSLKKDGSLEWMDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	0	1
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	1.0	0.9272
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	7.3	0.9038
AT3G58030			RING/U-box superfamily protein...		Lus10029292 [exp]	7.8	0.8212
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	9.5	0.8488
AT3G14830			unknown protein		Lus10005552 [exp]	10.6	0.8877
AT1G13990			unknown protein		Lus10036787 [exp]	13.0	0.8527
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	16.4	0.8248
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10039120 [exp]	18.8	0.8388
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	20.3	0.8887
AT5G05670			signal recognition particle bi...		Lus10030896 [exp]	21.0	0.8453

Compare expression of checked genes

Lus10041368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.