Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45720 627 / 0 ARM repeat superfamily protein (.1.2) AT1G01830 546 / 0 ARM repeat superfamily protein (.1.2.3) AT5G50900 251 / 6e-76 ARM repeat superfamily protein (.1) AT1G61350 144 / 1e-36 ARM repeat superfamily protein (.1) AT2G05810 139 / 5e-35 ARM repeat superfamily protein (.1.2) AT3G54790 74 / 1e-13 ARM repeat superfamily protein (.1.2) AT2G23140 72 / 5e-13 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 66 / 3e-11 ARM repeat superfamily protein (.1) AT5G58680 65 / 6e-11 ARM repeat superfamily protein (.1) AT5G67340 59 / 9e-09 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036559 [exp] 991 / 0 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016848 [exp] 442 / 9e-153 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2) Lus10018423 [exp] 128 / 5e-31 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10002598 [exp] 122 / 3e-29 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10029995 [exp] 117 / 9e-28 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10035337 [exp] 102 / 2e-23 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10035338 [exp] 81 / 3e-17 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10029996 [exp] 81 / 4e-17 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10024899 [exp] 82 / 6e-16 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076500 [exp] 725 / 0 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 702 / 0 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 260 / 2e-79 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 253 / 1e-76 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 189 / 1e-52 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 186 / 6e-52 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.014G158700 [exp] 161 / 7e-43 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.002G224400 [exp] 155 / 1e-40 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 87 / 8e-18 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 84 / 1e-16 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10041369 pacid=23179958 polypeptide=Lus10041369 locus=Lus10041369.g ID=Lus10041369.BGIv1.0 annot-version=v1.0 ATGGGAGAAATTCGCAGCGGTCGGAAAGGCAAAGAAGTTATTGTATCAACCGAATTCCAGTTGGTGGAAGATTGGCTCTCCCATGCTCAAGAGACAATTC CTCTGGTGATCGATAAGGCGAAACAAGTCAAGGGCTTATTTCCAGGAAGATGGAAGAACATCATCTCCAAGCTCGAGCAGATTTCGCCGCTGATTTCGGA GCTATCGAGGCACCCTTGCTTCTCCAAGAACCCTCTCTGTAAAGAGCAGTTACAATCGGTCTCGTCAATTCTTGACGAGACTGTAAAATTGGCAGAGCTC TGTTTGGGAGAAAAGCAACAAGGGAAGCTGCAGATGCAGAGTGACCTCGATTCTCTGTCCGGGAAGTTGGATTTGAACTTGAAGGACTGTTCGCTTCTAA TCAAGACAGCTCTTCTCGCTGAAGCTCCAACTACCGTGTCGAAATCAAAATCGGAGGATGATGTTTCCTCTGTTCTGAGTGAGTTACTTGCTCGGCTTCA AATCGGCGATCTGGACTCGAAGCACCGAGCTCTAGACGGGGTAGTCGAGTTCATGAAAGAAGATGAATCAAAGGCACTTCACTCTGTCATCACCAGGAGC AACGTAGCAGCTTTGGTTCAGCTGTTAACCGCAACTTCGCCGCGAATTCGAGAAAAGACCGTTACTATAATCTGCTCGCTTGTCGAATCGGGAAGTTGCT GCGAAAATTGGCTGGTTTCGGAGAATGTCCTACCTCCTCTGATCAGGCTGATCGAGTCTGGAACAGAAATGGGGAAGGAAAAGGCCGTCTTTTCGCTCCA GAGGCTTTCAATCGATGCCGAAACGGCCAGATCGATCGTCGGCCATGGCGGAATTCAGCCGCTGATCGAGCTGTGTAAAACAGGGGACTCTGTTTCTCAG GCTGCAGCAGCTTGCACACTGAAGAACATTTCGACCGTGCCCGAAGTTCGGCAGAGTCTCACTGAAGAAGGAGCTGTTAAGGTAACGATTGACCTTCTAG ATTGCGGGATCCTGCTCGGAACGAAAGAATACGCAGCAGAATGCCTACAGAATCTCACCGCAAGCAACGAGAGCTTGCGAAGAATTGTGATCTCAGAAGG CGGGATTCGATCCTTGTTAGCATATCTCGACAACACTTCTCTGCCTCAGGAATCTCCAATTGCAGCATTGAGGAATTTGGTCAACTCTGTTTCAATGGAA ACCCTAGTTTCGTCCGGGTTCTTCCCCCGAATCGTCCACGTGCTAAAGTCGGGATCTTTAGGAGCGCAGCAGGCCGCCGCGTCAGCAATCTGTCGAGTAT GCGCGTCGAATTTGGAGATGAAGAAGCTAGCAGGGGAAGCAGGGTGCATTCCTTTACTGATCAAACTACTCGAGGCAAAATCGAACGGAGCGAGGGAGGC GTCCGCCCAGGCGATTTCGAGCTTGATGACGGTATCACAGAACACGAAGGAGGTTAAGAAGGATTATGGGAGGAGCGTGCCGAGTTTGGTGCAGTTGTTG GAGGCTAGCCCGCAGAACACAGCGAAGAAGTACGCAGTGGCTTGCCTTTCGGGGCTTTCGTCGAGCAGGAAGTGTAGGAAGATGATGGTGTCTTACGGGG CGAGCGGGTACTTGAAGAAGCTGACAGAGATGGATGTTGCTGGGTCGAAGAAGCTGCTTGAGAGGCTGGAACGAGGGAAGATCAGGAGCTTGTTCATCAG GAAATAA
AA sequence Show only first row Show all	>Lus10041369 pacid=23179958 polypeptide=Lus10041369 locus=Lus10041369.g ID=Lus10041369.BGIv1.0 annot-version=v1.0 MGEIRSGRKGKEVIVSTEFQLVEDWLSHAQETIPLVIDKAKQVKGLFPGRWKNIISKLEQISPLISELSRHPCFSKNPLCKEQLQSVSSILDETVKLAEL CLGEKQQGKLQMQSDLDSLSGKLDLNLKDCSLLIKTALLAEAPTTVSKSKSEDDVSSVLSELLARLQIGDLDSKHRALDGVVEFMKEDESKALHSVITRS NVAALVQLLTATSPRIREKTVTIICSLVESGSCCENWLVSENVLPPLIRLIESGTEMGKEKAVFSLQRLSIDAETARSIVGHGGIQPLIELCKTGDSVSQ AAAACTLKNISTVPEVRQSLTEEGAVKVTIDLLDCGILLGTKEYAAECLQNLTASNESLRRIVISEGGIRSLLAYLDNTSLPQESPIAALRNLVNSVSME TLVSSGFFPRIVHVLKSGSLGAQQAAASAICRVCASNLEMKKLAGEAGCIPLLIKLLEAKSNGAREASAQAISSLMTVSQNTKEVKKDYGRSVPSLVQLL EASPQNTAKKYAVACLSGLSSSRKCRKMMVSYGASGYLKKLTEMDVAGSKKLLERLERGKIRSLFIRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45720			ARM repeat superfamily protein...		Lus10041369 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	2.2	0.9304
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	3.9	0.8987
AT3G15040			Protein of unknown function, D...		Lus10034190 [exp]	12.6	0.8833
AT4G32750			unknown protein		Lus10022138 [exp]	12.8	0.8966
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	17.0	0.8853
AT3G54450			Major facilitator superfamily ...		Lus10024156 [exp]	18.3	0.9014
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	18.8	0.8493
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	20.1	0.8962
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	27.3	0.8063
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	37.5	0.8902

Compare expression of checked genes

Lus10041369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.