Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036557 [exp] 120 / 9e-36 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153500 [exp] 64 / 7e-13 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.014G076702 [exp] 59 / 4e-11 AT5G19790 74 / 5e-15 related to AP2 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041371 pacid=23179608 polypeptide=Lus10041371 locus=Lus10041371.g ID=Lus10041371.BGIv1.0 annot-version=v1.0 ATGAAGAGCATCGAGAAATCTGTGGAACCGAGCATAATCGTGCCGTCTTCAGGGGGGGAGGAGCAGAGCTATTTGGTGGAGCAGGCGGCTGGGAGTTGCT CGTGGGAGACGTCAAGTGTGTCGGATTGCAGTAATGGGTGGGTTGGGTTCCGGCAGCCGGCGGCGGGTATGGATTTTTCCTCCGACGGGTCGGATTGCAG CGGCGATCATTACGGGATGTCGGGTCAAATGGTGGAGAATTGGAATTGGATCGATAGTCCTGAGGTTTCGTTCGCGGAGAGTATTATTAGCTCAGAGGAG GAATCGAGGAGTAAGAGGTTTAAGGTTTCTTCCTCTGTTGCCATCCCTCCGCCATCGTCGTCGTTCTCACCTTGGTCGTATCACAGCGATAGCTGA
AA sequence Show only first row Show all	>Lus10041371 pacid=23179608 polypeptide=Lus10041371 locus=Lus10041371.g ID=Lus10041371.BGIv1.0 annot-version=v1.0 MKSIEKSVEPSIIVPSSGGEEQSYLVEQAAGSCSWETSSVSDCSNGWVGFRQPAAGMDFSSDGSDCSGDHYGMSGQMVENWNWIDSPEVSFAESIISSEE ESRSKRFKVSSSVAIPPPSSSFSPWSYHSDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041371 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10041372 [exp]	1.0	0.9304
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	6.5	0.8448
					Lus10042011 [exp]	7.5	0.8988
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	10.7	0.8751
AT4G39510		CYP96A12	"cytochrome P450, family 96, s...		Lus10018159 [exp]	11.0	0.8018
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	11.6	0.8870
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	11.9	0.8138
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	12.3	0.8846
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	14.1	0.8709
					Lus10036557 [exp]	14.5	0.8621

Compare expression of checked genes

Lus10041371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.