Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61080 491 / 4e-176 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036555 [exp] 506 / 0 AT3G61080 457 / 6e-164 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153100 [exp] 540 / 0 AT3G61080 499 / 1e-179 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03881 [flax] [poplar] Fructosamin_kin Fructosamine kinase
Representative CDS sequence Show only first row Show all	>Lus10041374 pacid=23179600 polypeptide=Lus10041374 locus=Lus10041374.g ID=Lus10041374.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGACAACTGGGAATTGCTTCTGCGAGCTGTTGCTACCCGCTTAAGCCCCGCCAACGATTCTGCTTCATGAAAAGACGAGCATTTGCCGTTG CTGCAATGATGAGCGACGATCCCATCAGTGACTGGATTATGACAGAAGGGAAGGCGACCAAGATTACAAGGATCAGCCCAATCGGAGGCGGCTGCATAAA TCGTGCAAATCGCTATGAAACTGACGCTGGTCCTTTCTTTGTCAAGACGAATAGGAGTATTGGACCATCCATGTTTGAAGGAGAATCTCTGGGGCTAAAT GCTATGTATCAGACTGGAACTATCCGTGTTCCTAGGCCATTCAAGGTTGGAGCTCTTCCAACAGGTGGATCGTATATAATCATGGAATTCATTCAATTCG GTGCATCTAGGTCGAACCAGTCTGAGTTAGGAAGGAAGCTTGCTGAAATGCATAAAGCCGGAAAATCGGAAAAAGGCTTCGGGTTTGATGTCGACAATAC AATTGGCAGTACTCCACAGATAAACAAATGGACATCAGATTGGATCGAATTCTACGCGGAGCACAGATTGGGATACCAACTGAAGTTAGCATTAGATCAG TATGGCGATTCGACCATATACCAGAAAGGACAAAAGCTGGTGAAGAACATGGCTCCACTCTTTGACAACATCGTCGTAGAGCCATGCCTGCTTCATGGAG ATTTGTGGAGTGGGAACATCAGCTCAGACAACAACGGAGATCCCGTCATTCTCGATCCGGCTTGCTATTATGGACACAGTGAAGCGGAGTTTGGGATGTC GTGGTGTGCAGGTTTCAGAGGAGCGTTCTACAACGGCTACTTTGAGGTGATGCCAAAGCAAGCAGGGTTTGAGAAGAGGAAGGATCTGTACATGCTGTAT CATTACCTGAATCATTACAATCTCTTTGGTTCCGGCTACCGATCTTCCTCGATGTCCATCATAGATGACTACCTCCGGTTGCTGAATGTATAG
AA sequence Show only first row Show all	>Lus10041374 pacid=23179600 polypeptide=Lus10041374 locus=Lus10041374.g ID=Lus10041374.BGIv1.0 annot-version=v1.0 MAAGQLGIASASCCYPLKPRQRFCFMKRRAFAVAAMMSDDPISDWIMTEGKATKITRISPIGGGCINRANRYETDAGPFFVKTNRSIGPSMFEGESLGLN AMYQTGTIRVPRPFKVGALPTGGSYIIMEFIQFGASRSNQSELGRKLAEMHKAGKSEKGFGFDVDNTIGSTPQINKWTSDWIEFYAEHRLGYQLKLALDQ YGDSTIYQKGQKLVKNMAPLFDNIVVEPCLLHGDLWSGNISSDNNGDPVILDPACYYGHSEAEFGMSWCAGFRGAFYNGYFEVMPKQAGFEKRKDLYMLY HYLNHYNLFGSGYRSSSMSIIDDYLRLLNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61080			Protein kinase superfamily pro...		Lus10041374 [exp]	0	1
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	3.0	0.9644
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	3.5	0.9518
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	4.5	0.9481
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	4.6	0.9466
AT1G21350			Thioredoxin superfamily protei...		Lus10028617 [exp]	6.9	0.9259
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	9.3	0.9498
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	9.6	0.9492
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	10.2	0.9354
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	10.9	0.9339
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	12.4	0.9269

Compare expression of checked genes

Lus10041374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.