Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01880 593 / 0 5'-3' exonuclease family protein (.1.2) AT3G48900 107 / 3e-24 single-stranded DNA endonuclease family protein (.1.2) AT3G28030 100 / 1e-21 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT5G26680 72 / 3e-13 5'-3' exonuclease family protein (.1.2) AT1G29630 45 / 0.0002 5'-3' exonuclease family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036554 [exp] 1028 / 0 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10005744 [exp] 116 / 4e-27 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10027451 [exp] 112 / 9e-26 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10039424 [exp] 107 / 6e-24 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10000270 [exp] 73 / 1e-13 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10011991 [exp] 48 / 3e-05 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10039423 [exp] 45 / 8e-05 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10002782 [exp] 46 / 0.0001 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 45 / 0.0001 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077300 [exp] 718 / 0 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.002G152801 [exp] 238 / 6e-73 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2) Potri.015G142800 [exp] 106 / 4e-24 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.017G070500 [exp] 107 / 1e-23 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.013G000700 [exp] 76 / 1e-14 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 45 / 0.0001 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041375 pacid=23179879 polypeptide=Lus10041375 locus=Lus10041375.g ID=Lus10041375.BGIv1.0 annot-version=v1.0 ATGGGCGTCGGCGGCAAGTTCTGGGACTTGCTCAAACCCTACGCTCGCCACGAGGATCCTGATTTCCTCAGAGACAAAAAGGTCGCCGTCGATCTTTCTT ACTGGATCGTTCAGCACGAGACCGCCATCAAAACCTCCTCCCCCAATCCTCACCTCCGCCTCACTTTCTTCCGCACCCTGAACCTCTTCTCCAAGTTCGG CGCATTCCCGGTGTTCGTCGCCGACGGAACTCCTTCGCCGTTGAAGTCTCAGGCGAGGATAGCCAGATTCTTCAGGAGTTCCGGCATTGACGCTTCACAA TGGCCGGTGGCTCAAGAAGGTGTGTCCGTTGAGAGAAACGGAGCTTTTTTAAAGTGTGTTAAGGAGTGCATTGGACTGCTGGAACTCTTGGGGATGCCTG TTTTGAAAGCGAACGGGGAAGCTGAAGCATTGTGTGCGCAGCTGAATCTGGAAGGTCATGTAGATGCATGTATCACGGCTGACAGTGATGCTTTCCTCTT TGGTGCTCAGTGCGTGATCAAATCCATCAAACCCAATGCAAAGGACCCCTTTGAATGCTATCTCATGTCAGATATTGAAGTTGGTCTAGGGTTAAAGAGG GAACATTTAATTGCCATTTCTCTCTTGGTTGGCAATGATCATGATCTTACTGGTGTTCAAGGGATCGGAATCGATAATGCTCTTCGATTTATCCAGCAAT TTGGTGCAGATGAGATTTTAGACAAATTACGTGAAATTGGTAGCGGGAGCGATCCTTCTTCCCAGGGTAGTCCAAAAGTTTTGAACCGTCCAATGCTCAG TACTCCAGGTGACAATTCTTCACCTAAGTCAAGAGTTACTCACTGTTCAGTCTGTGGTCATCCTGGCAGCAAAAGAGCACATGGAAAGTCATCTTGTGAA TATTGTCAACCCAGCTGTGAGGAAGGTTGCGTGAAAAAGCCTGAGGGATTTAGGTGTAACTGCTCATGCTGTGATATGGACAGGAAAGAGAAAGAGCAGA TAAAGCATGAAAACTGGATAATGAAAGTTTGTGATAAGATTGCCAGGGAGCCAAATTTCCCTAATGACAAGATAATTGAGATGTACTTGTGCAAAGAGAA TGGGAACTTCACTGGCGACGATCCTTGCATTTCATGGCAAACCCCAGAAACCGACATGTTGGTCGACTTGTTGGTTTTCCGGCAGCATTGGGAGCCGTCT TATGTCAGACAGAGGATGCTTCCTATGCTGTCCACCATATATCTTAGAGACACCGCGGAAAGGCCAGCAACGTCCTTGTTAAACGGGCAATTTGAATTCG ATTGCATTCAGCGGATAAAGATCAGGGCTGGACACCAATCTTTTGTTGTCAAATGGAGGAAAGCCGGTACAAAGCCAACTGATTCTTCACATCACCATCA TGAAGAGCAAGATGAGATTATCGAGATTGATGAAACTTCCGACGGCTTGAACGACGAGTTGGAAGAACCACCCTTGATTCATGTCGATCATGAGGGTCAG TTTGTCTCGACGGACGAAAATATGGAGCTCGTCCGTGCTGCTTTCCCAGACGAAGTTGTGAAATTTTGGTTGGCTAAGGAACTGAAAGAATCGAAGAGAA AGCGTTCAAAATCTGGTGATAAGTCAGAAAACCTAAAGTCACAAGGTGTCCAACTTACAATTACTGAGTTTTTTCGGTCAAGCAAAGCTCAAGTCAGTGA TAAACAAGGAGAAGTCTCCAAGAGTTCTCCAAAGGAAGAAGACAGAGAAGAAATCAAGAAGACTTCAAATTCACCTGTGTCAAAGTCTGCTAGACGCCGA CTTCTGTTCAAGTAG
AA sequence Show only first row Show all	>Lus10041375 pacid=23179879 polypeptide=Lus10041375 locus=Lus10041375.g ID=Lus10041375.BGIv1.0 annot-version=v1.0 MGVGGKFWDLLKPYARHEDPDFLRDKKVAVDLSYWIVQHETAIKTSSPNPHLRLTFFRTLNLFSKFGAFPVFVADGTPSPLKSQARIARFFRSSGIDASQ WPVAQEGVSVERNGAFLKCVKECIGLLELLGMPVLKANGEAEALCAQLNLEGHVDACITADSDAFLFGAQCVIKSIKPNAKDPFECYLMSDIEVGLGLKR EHLIAISLLVGNDHDLTGVQGIGIDNALRFIQQFGADEILDKLREIGSGSDPSSQGSPKVLNRPMLSTPGDNSSPKSRVTHCSVCGHPGSKRAHGKSSCE YCQPSCEEGCVKKPEGFRCNCSCCDMDRKEKEQIKHENWIMKVCDKIAREPNFPNDKIIEMYLCKENGNFTGDDPCISWQTPETDMLVDLLVFRQHWEPS YVRQRMLPMLSTIYLRDTAERPATSLLNGQFEFDCIQRIKIRAGHQSFVVKWRKAGTKPTDSSHHHHEEQDEIIEIDETSDGLNDELEEPPLIHVDHEGQ FVSTDENMELVRAAFPDEVVKFWLAKELKESKRKRSKSGDKSENLKSQGVQLTITEFFRSSKAQVSDKQGEVSKSSPKEEDREEIKKTSNSPVSKSARRR LLFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01880			5'-3' exonuclease family prote...		Lus10041375 [exp]	0	1
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	2.4	0.7973
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	4.4	0.8119
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	8.1	0.7878
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	11.0	0.7926
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	16.3	0.7875
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	16.8	0.8055
					Lus10033943 [exp]	17.2	0.7710
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	18.4	0.7730
					Lus10039070 [exp]	19.7	0.7742
					Lus10028270 [exp]	21.9	0.7684

Compare expression of checked genes

Lus10041375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.