Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01840 82 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036553 [exp] 263 / 3e-91 AT1G01840 101 / 9e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153000 [exp] 128 / 3e-38 AT1G01840 94 / 1e-24 unknown protein Potri.014G077000 [exp] 121 / 2e-35 AT1G01840 100 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041376 pacid=23179777 polypeptide=Lus10041376 locus=Lus10041376.g ID=Lus10041376.BGIv1.0 annot-version=v1.0 ATGGAGGAAATGACAGCATCAGATGCAGCAAACCCGCCGGTACCGTTGCCGGACCTCGTACTATCCTTAGAGCAGGCAACTCAACTTGCGAACCAGCTCC CTTCATCCGACCCAAATCACATACAACAAATCTACTCCGCACACCACCTCGCCCACCACCATCTCGCTTCGTTCCTCCAATCACCGCCGCCGGAGAACTC CGTCTCCTCCGCCACCGGAGCCGGAGAACAAGAAGACAACAACAGCGGTGAGCCGATGCAAGTTGGGGAGGACGAAGAAGAGGAGAATTCAATGGCTGCG ACAATCAACAAAGTAGAGGAGAGGATGAAGAATTGTTTCATAAAGAACAAGCGGCAACGAAAGCGGCCACTTTCGCCTTCTTCCGCCGCCGATGATGGAT ACGTCGACGGAAGAATAATCAAAGGGGCTTTCGACCCTCTTGGGACCAGATTAAGAGCTCTGGACCTTATCGACCAGTTCCATGCCTGA
AA sequence Show only first row Show all	>Lus10041376 pacid=23179777 polypeptide=Lus10041376 locus=Lus10041376.g ID=Lus10041376.BGIv1.0 annot-version=v1.0 MEEMTASDAANPPVPLPDLVLSLEQATQLANQLPSSDPNHIQQIYSAHHLAHHHLASFLQSPPPENSVSSATGAGEQEDNNSGEPMQVGEDEEEENSMAA TINKVEERMKNCFIKNKRQRKRPLSPSSAADDGYVDGRIIKGAFDPLGTRLRALDLIDQFHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01840			unknown protein		Lus10041376 [exp]	0	1
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	3.3	0.8723
AT2G43100		ATLEUD1, IPMI2	isopropylmalate isomerase 2 (....		Lus10004742 [exp]	4.2	0.8508
AT3G22530			unknown protein		Lus10004901 [exp]	4.9	0.8706
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	5.9	0.8546
AT2G42310			unknown protein		Lus10026317 [exp]	6.7	0.8352
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	7.1	0.8623
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	8.9	0.8571
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	11.0	0.8381
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	11.2	0.8388
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	14.5	0.8350

Compare expression of checked genes

Lus10041376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.