Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45690 386 / 7e-133 PEX16, SSE1, ATPEX16 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036549 [exp] 674 / 0 AT2G45690 388 / 8e-134 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1) Lus10007551 [exp] 61 / 6e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152300 [exp] 471 / 2e-166 AT2G45690 450 / 5e-159 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1) Potri.014G078300 [exp] 462 / 7e-163 AT2G45690 450 / 6e-159 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08610 [flax] [poplar] Pex16 Peroxisomal membrane protein (Pex16)
Representative CDS sequence Show only first row Show all	>Lus10041379 pacid=23179627 polypeptide=Lus10041379 locus=Lus10041379.g ID=Lus10041379.BGIv1.0 annot-version=v1.0 ATGTGCGGAGTGGTTCTAGGTTGCGAGGATAACCGCGTGATGGTTGGGTTGGTGAATATGGAGGCTGAAACATATGCAATATGGTCTGTCGCCGCTCCAG AAGGGGAGAAGGGCTTTGATTTCGCTCGCTACTGGGGATTCGCCGTCGTAGGATCCAAACTGATCGTTGCAGGAGGTAAACCTATGTATGTTGATGTCCT GAGCCTTTTTCGCTTGGTGTATTCTAAAAAGGGAGTAACGTGGCTGCTACCTGAAAGGTTTTCCGAGTCAGAGATTGGGCCAGAAGCAGTCACTGCTGTA CTGGGTATAATCACTGCACTCAATGAGCATATTATCGATACAACTCCAAGTCAGATACATGCTGCTGGCTCTGTAGAGCCTCGGTCTTTTCCGTATCCAC TATGCATATCCATGATAAAGGAGCTGGAGACGTTGGTTGAAGTTGCCTCACAACAATATTTTGGTGATGATAAAAAGTGGAACTTCATTGCTCTTACAGA AGCCACCAAGGTGGTAGTTAGGTTGGCATTGTTCCGGAACAGTGGATATAAGATGCTTTTGCAAGGAGGAGAGACACCAAATGTTGAAAATCCTACAGAT CTCTCAAGAACTTCCAAGCCTGGAAACCATAATGTGCCTGGCCAGTTTCCGAATATGAACGGGAGAAGCCCAGGGACTGGGCAAGGCAAGGCTTTGTCTG CATTGAGCAGATTTCGAGAAAATGCCAAGACTTTAGCTGAGCCAGATTGGTTACGCCGGGTTCATATTCAACAATCTATTATCGAGCCCCCTGCTCTAGT GGTTCAGGCGCCATCACTTTCAAAGATATTGTCCGAAAGAGGCGCTTCTGGGGCATTATTTGTTCTAGGGGAGGCACTCTTCATGACAAGACCCCTGATT TATGTATTGTTAATCAGGAAATATGGAGTTCGTTCATGGGTCCCTTGGTTTGTTTCTCTGGCTGTTGATGTTATCGGGGTATGCTTCGTTACACCGCTAT CTAAACTGCAGTTTAGAGAAAGAGATCAGCAGATTCATCTTAACGATTCTGAAAAGCACGAGCTAAGAAGAAGGAAATTGCTATGGGCATTTTACCTGAT GAGGGATCCCTTCTTCAGCAAGTATACAAGGGAGAGACTTGACAAGACTGAGAAGACGCTGGAGCCTGTACCTCTAGTAGGTGTCTTGACAGGGAAACTC GTGGAGCTTATTTGTGGAGCTCAAACCCGATACACTTACATGTCTGGTTCTTGA
AA sequence Show only first row Show all	>Lus10041379 pacid=23179627 polypeptide=Lus10041379 locus=Lus10041379.g ID=Lus10041379.BGIv1.0 annot-version=v1.0 MCGVVLGCEDNRVMVGLVNMEAETYAIWSVAAPEGEKGFDFARYWGFAVVGSKLIVAGGKPMYVDVLSLFRLVYSKKGVTWLLPERFSESEIGPEAVTAV LGIITALNEHIIDTTPSQIHAAGSVEPRSFPYPLCISMIKELETLVEVASQQYFGDDKKWNFIALTEATKVVVRLALFRNSGYKMLLQGGETPNVENPTD LSRTSKPGNHNVPGQFPNMNGRSPGTGQGKALSALSRFRENAKTLAEPDWLRRVHIQQSIIEPPALVVQAPSLSKILSERGASGALFVLGEALFMTRPLI YVLLIRKYGVRSWVPWFVSLAVDVIGVCFVTPLSKLQFRERDQQIHLNDSEKHELRRRKLLWAFYLMRDPFFSKYTRERLDKTEKTLEPVPLVGVLTGKL VELICGAQTRYTYMSGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	0	1
AT5G27830			unknown protein		Lus10020660 [exp]	3.7	0.8759
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	6.5	0.8277
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	8.1	0.8286
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	8.4	0.8195
AT2G42780			unknown protein		Lus10031380 [exp]	8.7	0.8582
AT5G22280			unknown protein		Lus10016983 [exp]	14.7	0.7961
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	17.1	0.8556
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	19.6	0.8283
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	19.7	0.8051
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030661 [exp]	21.0	0.8130

Compare expression of checked genes

Lus10041379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.